Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849308

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849308


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7180101000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M4Human oocyte DNA methylomeMethylomeOocyte (germinal vesicle (GV) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000278594 translocase of outer mitochondrial membrane 40 homolog (yeast) (TOMM40) pseudogene 4.6439 0.0000
2 ENSG00000283636 Metazoan signal recognition particle RNA 4.6439 0.0000
3 ENSG00000201713 RNA5SP125 RNA, 5S ribosomal pseudogene 125 4.4594 0.0000
4 ENSG00000229696 KARS1P1 lysyl-tRNA synthetase 1 pseudogene 1 4.4594 0.0000
5 ENSG00000278159 MIR8062 microRNA 8062 4.4594 0.0000
6 ENSG00000228209 PNPP1 PNP pseudogene 1 4.3923 0.0000
7 ENSG00000267871 ZNF460-AS1 ZNF460 antisense RNA 1 4.3923 0.0000
8 ENSG00000260932 novel transcript, antisense to MLYCD - OSGIN1 readthrough 4.3294 0.0000
9 ENSG00000240494 RPS12P28 ribosomal protein S12 pseudogene 28 4.3219 0.0000
10 ENSG00000248635 pseudogene similar to part of UDP glucuronosyltransferase 2 family protein 4.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000235462 TAB3P1 TGF-beta activated kinase 1/MAP3K7 binding protein 3 pseudogene 1 -3.0000 0.6298
63127 ENSG00000235435 novel transcript -3.0000 1.0000
63126 ENSG00000235215 novel transcript -3.0000 0.2523
63125 ENSG00000234907 ribosomal protein L39 (RPL39) pseudogene -3.0000 1.0000
63124 ENSG00000234816 H2AC5P H2A clustered histone 5, pseudogene -3.0000 1.0000
63123 ENSG00000233953 novel transcript -3.0000 0.1726
63122 ENSG00000233435 AGGF1P2 angiogenic factor with G-patch and FHA domains 1 pseudogene 2 -3.0000 1.0000
63121 ENSG00000233020 CHORDC1P5 CHORDC1 pseudogene 5 -3.0000 0.0087
63120 ENSG00000232760 novel pseudogene -3.0000 0.0707
63119 ENSG00000232661 CFTR-AS1 CFTR antisense RNA 1 -3.0000 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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