SHOGoiN Cell Methylome: GSM1849308

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849308


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7180101000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M4Human oocyte DNA methylomeMethylomeOocyte (germinal vesicle (GV) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000278594 translocase of outer mitochondrial membrane 40 homolog (yeast) (TOMM40) pseudogene 4.6439 0.0000
2 ENSG00000283636 NA 4.6439 0.0000
3 ENSG00000201713 RNA5SP125 RNA, 5S ribosomal pseudogene 125 4.4594 0.0000
4 ENSG00000229696 KARSP1 lysyl-tRNA synthetase pseudogene 1 4.4594 0.0000
5 ENSG00000278159 MIR8062 microRNA 8062 4.4594 0.0000
6 ENSG00000228209 nucleoside phosphorylase (NP) pseudogene 4.3923 0.0000
7 ENSG00000267871 ZNF460-AS1 ZNF460 antisense RNA 1 4.3923 0.0000
8 ENSG00000260932 novel transcript, antisense to MLYCD - OSGIN1 readthrough 4.3294 0.0000
9 ENSG00000240494 RPS12P28 ribosomal protein S12 pseudogene 28 4.3219 0.0000
10 ENSG00000248635 pseudogene similar to part of UDP glucuronosyltransferase 2 family protein 4.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000201744 RNU6-34P RNA, U6 small nuclear 34, pseudogene -3.1699 0.3905
63340 ENSG00000199378 NA -3.1699 1.0000
63339 ENSG00000197172 MAGEA6 MAGE family member A6 -3.1699 0.2681
63338 ENSG00000197067 OR2T32P olfactory receptor family 2 subfamily T member 32 pseudogene -3.1699 1.0000
63337 ENSG00000185591 SP1 Sp1 transcription factor -3.1699 0.0471
63336 ENSG00000185002 RFX6 regulatory factor X6 -3.1699 0.3905
63335 ENSG00000184530 C6orf58 chromosome 6 open reading frame 58 -3.1699 0.1115
63334 ENSG00000184005 ST6GALNAC3 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 -3.1699 0.2681
63333 ENSG00000174948 GPR149 G protein-coupled receptor 149 -3.1699 0.0471
63332 ENSG00000174791 RIN1 Ras and Rab interactor 1 -3.1699 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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