SHOGoiN Cell Methylome: GSM1849309
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1849309 Profile download | 7180101000000000000000-755 | Sequence Read Archive | SRP062328 | SRP062328_M5 | Human oocyte DNA methylome | Methylome | Oocyte (germinal vesicle (GV) stage ) | Human | Genitalia | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000264812 | novel transcript, sense intronic C17orf101 | 4.7549 | 0.0000 | |
| 2 | ENSG00000216307 | N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae) (NAA40) pseudogene | 4.5236 | 0.0000 | |
| 3 | ENSG00000237716 | novel transcript | 4.5236 | 0.0000 | |
| 4 | ENSG00000225956 | novel transcript | 4.4594 | 0.0000 | |
| 5 | ENSG00000251523 | novel transcript | 4.4594 | 0.0000 | |
| 6 | ENSG00000199855 | RNU6-490P | RNA, U6 small nuclear 490, pseudogene | 4.3923 | 0.0000 |
| 7 | ENSG00000230079 | STK24P1 | serine/threonine kinase 24 pseudogene 1 | 4.3923 | 0.0000 |
| 8 | ENSG00000239742 | RN7SL672P | RNA, 7SL, cytoplasmic 672, pseudogene | 4.3219 | 0.0000 |
| 9 | ENSG00000246777 | novel transcript | 4.3219 | 0.0000 | |
| 10 | ENSG00000214195 | HMGN2P31 | high mobility group nucleosomal binding domain 2 pseudogene 31 | 4.2479 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000271022 | programmed cell death 2, pseudogene | -3.0135 | 0.0145 | |
| 63340 | ENSG00000266913 | LINC01841 | long intergenic non-protein coding RNA 1841 | -3.0090 | 0.1686 |
| 63339 | ENSG00000138678 | GPAT3 | glycerol-3-phosphate acyltransferase 3 | -3.0089 | 0.0025 |
| 63338 | ENSG00000267470 | ZNF571-AS1 | ZNF571 antisense RNA 1 | -3.0065 | 0.0333 |
| 63337 | ENSG00000180458 | novel transcript, antisense to ZNF793 | -3.0065 | 0.0333 | |
| 63336 | ENSG00000267541 | MTCO2P2 | MT-CO2 pseudogene 2 | -3.0053 | 0.0000 |
| 63335 | ENSG00000267895 | sialic acid binding Ig-like lectin 19, pseudogene | -3.0037 | 0.0902 | |
| 63334 | ENSG00000168995 | SIGLEC7 | sialic acid binding Ig like lectin 7 | -3.0037 | 0.0902 |
| 63333 | ENSG00000235858 | novel transcript | -3.0003 | 0.0709 | |
| 63332 | ENSG00000283999 | novel transcript | -3.0000 | 0.6230 |
