SHOGoiN Cell Methylome: GSM1849309

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849309


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7180101000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M5Human oocyte DNA methylomeMethylomeOocyte (germinal vesicle (GV) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000264812 novel transcript, sense intronic C17orf101 4.7549 0.0000
2 ENSG00000216307 N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae) (NAA40) pseudogene 4.5236 0.0000
3 ENSG00000237716 novel transcript 4.5236 0.0000
4 ENSG00000225956 novel transcript 4.4594 0.0000
5 ENSG00000251523 novel transcript 4.4594 0.0000
6 ENSG00000199855 RNU6-490P RNA, U6 small nuclear 490, pseudogene 4.3923 0.0000
7 ENSG00000230079 STK24P1 serine/threonine kinase 24 pseudogene 1 4.3923 0.0000
8 ENSG00000239742 RN7SL672P RNA, 7SL, cytoplasmic 672, pseudogene 4.3219 0.0000
9 ENSG00000246777 novel transcript 4.3219 0.0000
10 ENSG00000214195 HMGN2P31 high mobility group nucleosomal binding domain 2 pseudogene 31 4.2479 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000271022 programmed cell death 2, pseudogene -3.0135 0.0145
63340 ENSG00000266913 LINC01841 long intergenic non-protein coding RNA 1841 -3.0090 0.1686
63339 ENSG00000138678 GPAT3 glycerol-3-phosphate acyltransferase 3 -3.0089 0.0025
63338 ENSG00000267470 ZNF571-AS1 ZNF571 antisense RNA 1 -3.0065 0.0333
63337 ENSG00000180458 novel transcript, antisense to ZNF793 -3.0065 0.0333
63336 ENSG00000267541 MTCO2P2 MT-CO2 pseudogene 2 -3.0053 0.0000
63335 ENSG00000267895 sialic acid binding Ig-like lectin 19, pseudogene -3.0037 0.0902
63334 ENSG00000168995 SIGLEC7 sialic acid binding Ig like lectin 7 -3.0037 0.0902
63333 ENSG00000235858 novel transcript -3.0003 0.0709
63332 ENSG00000283999 novel transcript -3.0000 0.6230

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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