Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM1849309
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1849309
Profile download
7180101000000000000000-755
Sequence Read Archive
SRP062328
SRP062328_M5
Human oocyte DNA methylome
Methylome
Oocyte (germinal vesicle (GV) stage )
Human
Genitalia
Bisulfite-Seq (WGBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000264812
novel transcript, sense intronic C17orf101
4.7549
0.0000
2
ENSG00000216307
N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae) (NAA40) pseudogene
4.5236
0.0000
3
ENSG00000237716
novel transcript
4.5236
0.0000
4
ENSG00000225956
novel transcript
4.4594
0.0000
5
ENSG00000251523
novel transcript
4.4594
0.0000
6
ENSG00000199855
RNU6-490P
RNA, U6 small nuclear 490, pseudogene
4.3923
0.0000
7
ENSG00000230079
STK24P1
serine/threonine kinase 24 pseudogene 1
4.3923
0.0000
8
ENSG00000239742
RN7SL672P
RNA, 7SL, cytoplasmic 672, pseudogene
4.3219
0.0000
9
ENSG00000246777
novel transcript
4.3219
0.0000
10
ENSG00000214195
HMGN2P31
high mobility group nucleosomal binding domain 2 pseudogene 31
4.2479
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000255633
MTRNR2L9
MT-RNR2 like 9
-2.9551
0.0000
63127
ENSG00000128626
MRPS12
mitochondrial ribosomal protein S12
-2.9548
0.0323
63126
ENSG00000272506
novel transcript
-2.9534
0.6295
63125
ENSG00000251535
pseudogene similar to part of zinc finger protein 74 (ZNF74)
-2.9534
0.6295
63124
ENSG00000225362
CT62
cancer/testis associated 62
-2.9534
0.0136
63123
ENSG00000211856
TRAJ33
T cell receptor alpha joining 33
-2.9534
0.6230
63122
ENSG00000211611
IGKV6-21
immunoglobulin kappa variable 6-21 (non-functional)
-2.9534
0.4124
63121
ENSG00000180770
OR7E129P
olfactory receptor family 7 subfamily E member 129 pseudogene
-2.9534
0.0204
63120
ENSG00000136531
SCN2A
sodium voltage-gated channel alpha subunit 2
-2.9534
0.6295
63119
ENSG00000183888
SRARP
steroid receptor associated and regulated protein
-2.9523
0.0066
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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