Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849309

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1849309 Profile download	7180101000000000000000-755	Sequence Read Archive	SRP062328	SRP062328_M5	Human oocyte DNA methylome	Methylome	Oocyte (germinal vesicle (GV) stage )	Human	Genitalia	Bisulfite-Seq (WGBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000264812		novel transcript, sense intronic C17orf101	4.7549	0.0000
2	ENSG00000216307		N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae) (NAA40) pseudogene	4.5236	0.0000
3	ENSG00000237716		novel transcript	4.5236	0.0000
4	ENSG00000225956		novel transcript	4.4594	0.0000
5	ENSG00000251523		novel transcript	4.4594	0.0000
6	ENSG00000199855	RNU6-490P	RNA, U6 small nuclear 490, pseudogene	4.3923	0.0000
7	ENSG00000230079	STK24P1	serine/threonine kinase 24 pseudogene 1	4.3923	0.0000
8	ENSG00000239742	RN7SL672P	RNA, 7SL, cytoplasmic 672, pseudogene	4.3219	0.0000
9	ENSG00000246777		novel transcript	4.3219	0.0000
10	ENSG00000214195	HMGN2P31	high mobility group nucleosomal binding domain 2 pseudogene 31	4.2479	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000255633	MTRNR2L9	MT-RNR2 like 9	-2.9551	0.0000
63127	ENSG00000128626	MRPS12	mitochondrial ribosomal protein S12	-2.9548	0.0323
63126	ENSG00000272506		novel transcript	-2.9534	0.6295
63125	ENSG00000251535		pseudogene similar to part of zinc finger protein 74 (ZNF74)	-2.9534	0.6295
63124	ENSG00000225362	CT62	cancer/testis associated 62	-2.9534	0.0136
63123	ENSG00000211856	TRAJ33	T cell receptor alpha joining 33	-2.9534	0.6230
63122	ENSG00000211611	IGKV6-21	immunoglobulin kappa variable 6-21 (non-functional)	-2.9534	0.4124
63121	ENSG00000180770	OR7E129P	olfactory receptor family 7 subfamily E member 129 pseudogene	-2.9534	0.0204
63120	ENSG00000136531	SCN2A	sodium voltage-gated channel alpha subunit 2	-2.9534	0.6295
63119	ENSG00000183888	SRARP	steroid receptor associated and regulated protein	-2.9523	0.0066

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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