Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849309

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849309


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7180101000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M5Human oocyte DNA methylomeMethylomeOocyte (germinal vesicle (GV) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000264812 novel transcript, sense intronic C17orf101 4.7549 0.0000
2 ENSG00000216307 N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae) (NAA40) pseudogene 4.5236 0.0000
3 ENSG00000237716 novel transcript 4.5236 0.0000
4 ENSG00000225956 novel transcript 4.4594 0.0000
5 ENSG00000251523 novel transcript 4.4594 0.0000
6 ENSG00000199855 RNU6-490P RNA, U6 small nuclear 490, pseudogene 4.3923 0.0000
7 ENSG00000230079 STK24P1 serine/threonine kinase 24 pseudogene 1 4.3923 0.0000
8 ENSG00000239742 RN7SL672P RNA, 7SL, cytoplasmic 672, pseudogene 4.3219 0.0000
9 ENSG00000246777 novel transcript 4.3219 0.0000
10 ENSG00000214195 HMGN2P31 high mobility group nucleosomal binding domain 2 pseudogene 31 4.2479 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000255633 MTRNR2L9 MT-RNR2 like 9 -2.9551 0.0000
63127 ENSG00000128626 MRPS12 mitochondrial ribosomal protein S12 -2.9548 0.0323
63126 ENSG00000272506 novel transcript -2.9534 0.6295
63125 ENSG00000251535 pseudogene similar to part of zinc finger protein 74 (ZNF74) -2.9534 0.6295
63124 ENSG00000225362 CT62 cancer/testis associated 62 -2.9534 0.0136
63123 ENSG00000211856 TRAJ33 T cell receptor alpha joining 33 -2.9534 0.6230
63122 ENSG00000211611 IGKV6-21 immunoglobulin kappa variable 6-21 (non-functional) -2.9534 0.4124
63121 ENSG00000180770 OR7E129P olfactory receptor family 7 subfamily E member 129 pseudogene -2.9534 0.0204
63120 ENSG00000136531 SCN2A sodium voltage-gated channel alpha subunit 2 -2.9534 0.6295
63119 ENSG00000183888 SRARP steroid receptor associated and regulated protein -2.9523 0.0066

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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