Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM1849310
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1849310
Profile download
5030206000000000000000-755
Sequence Read Archive
SRP062328
SRP062328_M6
Human oocyte DNA methylome
Methylome
Oocyte (mature metaphase (MI) stage )
Human
Genitalia
Bisulfite-Seq (WGBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000226721
EEF1DP2
eukaryotic translation elongation factor 1 delta pseudogene 2
4.5850
0.0000
2
ENSG00000269886
novel transcript, antisense to TTLL3
4.3219
0.0000
3
ENSG00000227407
novel transcript
4.1699
0.0000
4
ENSG00000254252
RPL7P20
ribosomal protein L7 pseudogene 20
4.1699
0.0000
5
ENSG00000254350
novel transcript
4.1699
0.0000
6
ENSG00000258719
novel transcript, antisense to NRXN3
4.1699
0.0000
7
ENSG00000267838
novel transcript
4.1699
0.0000
8
ENSG00000268496
novel transcript, sense intronic to TTYH1
4.1699
0.0000
9
ENSG00000269873
novel transcript
4.1699
0.0000
10
ENSG00000271239
novel transcript
4.0000
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000200969
NA
-2.8003
0.0652
63127
ENSG00000247925
novel transcript
-2.7985
0.0012
63126
ENSG00000260145
novel transcript, antisense to NLRC5
-2.7968
0.0000
63125
ENSG00000259702
novel transcript
-2.7925
0.3824
63124
ENSG00000258433
novel transcript
-2.7925
0.3824
63123
ENSG00000249285
novel pseudogene
-2.7925
0.0424
63122
ENSG00000242364
peroxiredoxin 5 (PRDX5) pseudogene
-2.7925
0.3824
63121
ENSG00000206906
RNU6-458P
RNA, U6 small nuclear 458, pseudogene
-2.7925
0.3824
63120
ENSG00000171136
RLN3
relaxin 3
-2.7916
0.0000
63119
ENSG00000196844
PATE2
prostate and testis expressed 2
-2.7908
0.0008
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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