SHOGoiN Cell Methylome: GSM1849310

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849310


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5030206000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M6Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MI) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000226721 EEF1DP2 eukaryotic translation elongation factor 1 delta pseudogene 2 4.5850 0.0000
2 ENSG00000269886 novel transcript, antisense to TTLL3 4.3219 0.0000
3 ENSG00000227407 novel transcript 4.1699 0.0000
4 ENSG00000254252 RPL7P20 ribosomal protein L7 pseudogene 20 4.1699 0.0000
5 ENSG00000254350 novel transcript 4.1699 0.0000
6 ENSG00000258719 novel transcript, antisense to NRXN3 4.1699 0.0000
7 ENSG00000267838 novel transcript 4.1699 0.0000
8 ENSG00000268496 novel transcript, sense intronic to TTYH1 4.1699 0.0000
9 ENSG00000269873 novel transcript 4.1699 0.0000
10 ENSG00000271239 novel transcript 4.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000253655 JCHAINP1 joining chain of multimeric IgA and IgM pseudogene 1 -2.8797 0.0180
63340 ENSG00000261416 novel transcript, antisense to CORO1A -2.8780 0.0004
63339 ENSG00000258702 novel transcript -2.8774 0.0015
63338 ENSG00000239946 ZBTB20-AS3 ZBTB20 antisense RNA 3 -2.8774 0.3885
63337 ENSG00000227019 OR7E101P olfactory receptor family 7 subfamily E member 101 pseudogene -2.8774 0.3885
63336 ENSG00000283167 novel pseudogene, similar to zonadhesin (Zan) -2.8765 0.0122
63335 ENSG00000230834 novel transcript -2.8757 0.0182
63334 ENSG00000110195 FOLR1 folate receptor 1 -2.8707 0.0033
63333 ENSG00000148704 VAX1 ventral anterior homeobox 1 -2.8663 0.0008
63332 ENSG00000243655 novel transcript, antisense to MTRNR2L1 -2.8658 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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