SHOGoiN Cell Methylome: GSM1849310
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1849310 Profile download | 5030206000000000000000-755 | Sequence Read Archive | SRP062328 | SRP062328_M6 | Human oocyte DNA methylome | Methylome | Oocyte (mature metaphase (MI) stage ) | Human | Genitalia | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000226721 | EEF1DP2 | eukaryotic translation elongation factor 1 delta pseudogene 2 | 4.5850 | 0.0000 |
| 2 | ENSG00000269886 | novel transcript, antisense to TTLL3 | 4.3219 | 0.0000 | |
| 3 | ENSG00000227407 | novel transcript | 4.1699 | 0.0000 | |
| 4 | ENSG00000254252 | RPL7P20 | ribosomal protein L7 pseudogene 20 | 4.1699 | 0.0000 |
| 5 | ENSG00000254350 | novel transcript | 4.1699 | 0.0000 | |
| 6 | ENSG00000258719 | novel transcript, antisense to NRXN3 | 4.1699 | 0.0000 | |
| 7 | ENSG00000267838 | novel transcript | 4.1699 | 0.0000 | |
| 8 | ENSG00000268496 | novel transcript, sense intronic to TTYH1 | 4.1699 | 0.0000 | |
| 9 | ENSG00000269873 | novel transcript | 4.1699 | 0.0000 | |
| 10 | ENSG00000271239 | novel transcript | 4.0000 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000253655 | JCHAINP1 | joining chain of multimeric IgA and IgM pseudogene 1 | -2.8797 | 0.0180 |
| 63340 | ENSG00000261416 | novel transcript, antisense to CORO1A | -2.8780 | 0.0004 | |
| 63339 | ENSG00000258702 | novel transcript | -2.8774 | 0.0015 | |
| 63338 | ENSG00000239946 | ZBTB20-AS3 | ZBTB20 antisense RNA 3 | -2.8774 | 0.3885 |
| 63337 | ENSG00000227019 | OR7E101P | olfactory receptor family 7 subfamily E member 101 pseudogene | -2.8774 | 0.3885 |
| 63336 | ENSG00000283167 | novel pseudogene, similar to zonadhesin (Zan) | -2.8765 | 0.0122 | |
| 63335 | ENSG00000230834 | novel transcript | -2.8757 | 0.0182 | |
| 63334 | ENSG00000110195 | FOLR1 | folate receptor 1 | -2.8707 | 0.0033 |
| 63333 | ENSG00000148704 | VAX1 | ventral anterior homeobox 1 | -2.8663 | 0.0008 |
| 63332 | ENSG00000243655 | novel transcript, antisense to MTRNR2L1 | -2.8658 | 0.0000 |
