Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849310

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849310


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5030206000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M6Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MI) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000226721 EEF1DP2 eukaryotic translation elongation factor 1 delta pseudogene 2 4.5850 0.0000
2 ENSG00000269886 novel transcript, antisense to TTLL3 4.3219 0.0000
3 ENSG00000227407 novel transcript 4.1699 0.0000
4 ENSG00000254252 RPL7P20 ribosomal protein L7 pseudogene 20 4.1699 0.0000
5 ENSG00000254350 novel transcript 4.1699 0.0000
6 ENSG00000258719 novel transcript, antisense to NRXN3 4.1699 0.0000
7 ENSG00000267838 novel transcript 4.1699 0.0000
8 ENSG00000268496 novel transcript, sense intronic to TTYH1 4.1699 0.0000
9 ENSG00000269873 novel transcript 4.1699 0.0000
10 ENSG00000271239 novel transcript 4.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000200969 NA -2.8003 0.0652
63127 ENSG00000247925 novel transcript -2.7985 0.0012
63126 ENSG00000260145 novel transcript, antisense to NLRC5 -2.7968 0.0000
63125 ENSG00000259702 novel transcript -2.7925 0.3824
63124 ENSG00000258433 novel transcript -2.7925 0.3824
63123 ENSG00000249285 novel pseudogene -2.7925 0.0424
63122 ENSG00000242364 peroxiredoxin 5 (PRDX5) pseudogene -2.7925 0.3824
63121 ENSG00000206906 RNU6-458P RNA, U6 small nuclear 458, pseudogene -2.7925 0.3824
63120 ENSG00000171136 RLN3 relaxin 3 -2.7916 0.0000
63119 ENSG00000196844 PATE2 prostate and testis expressed 2 -2.7908 0.0008

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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