Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849311

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849311


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5030206000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M7Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MI) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000260171 novel transcript 7.8765 0.0000
2 ENSG00000280665 TEC 7.8329 0.0000
3 ENSG00000188691 OR56A5 olfactory receptor family 56 subfamily A member 5 7.7698 0.0000
4 ENSG00000252091 RNU6-1146P RNA, U6 small nuclear 1146, pseudogene 7.4998 0.0000
5 ENSG00000232707 AP1B1P2 AP1B1 pseudogene 2 7.4429 0.0000
6 ENSG00000237439 novel pseudogene 7.4429 0.0000
7 ENSG00000214344 OR4F13P olfactory receptor family 4 subfamily F member 13 pseudogene 7.3399 0.0000
8 ENSG00000215493 kelch-like 12 (Drosophila) (KLH12) pseudogene 7.2668 0.0000
9 ENSG00000250330 GABA(A) receptor-associated protein-like 2 (GABARAPL2 ) pseudogene 7.2288 0.0000
10 ENSG00000202324 RNA5SP366 RNA, 5S ribosomal pseudogene 366 7.1997 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000257093 DENND11 DENN domain containing 11 -5.0000 0.0002
63127 ENSG00000256077 LINC02442 long intergenic non-protein coding RNA 2442 -5.0000 0.0286
63126 ENSG00000253235 novel transcript -5.0000 0.1109
63125 ENSG00000252745 RNA5SP143 RNA, 5S ribosomal pseudogene 143 -5.0000 0.1109
63124 ENSG00000250497 novel transcript -5.0000 0.1109
63123 ENSG00000249885 ARHGEF38-IT1 ARHGEF38 intronic transcript 1 -5.0000 0.1109
63122 ENSG00000241114 ribosomal protein S26 (RPS26) pseudogene -5.0000 0.1109
63121 ENSG00000239014 SNORD108 small nucleolar RNA, C/D box 108 -5.0000 0.1109
63120 ENSG00000235236 novel transcript -5.0000 0.1109
63119 ENSG00000203778 FAM229B family with sequence similarity 229 member B -5.0000 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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