SHOGoiN Cell Methylome: GSM1849312

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849312


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7180101000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M8Human oocyte DNA methylomeMethylomeOocyte (germinal vesicle (GV) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000200677 NA 8.2479 0.0000
2 ENSG00000279259 TEC 7.7177 0.0000
4 ENSG00000279310 TEC 7.6073 0.0000
5 ENSG00000213235 EEF1A1P16 eukaryotic translation elongation factor 1 alpha 1 pseudogene 16 7.5999 0.0000
6 ENSG00000256211 S-phase kinase-associated protein 1 (SKP1) pseudogene 7.5999 0.0000
7 ENSG00000213928 IRF9 interferon regulatory factor 9 7.4094 0.0000
9 ENSG00000260914 novel protein 7.2946 0.0000
10 ENSG00000181788 SIAH2 siah E3 ubiquitin protein ligase 2 7.2854 0.0000
63332 ENSG00000230864 novel transcript -5.5236 0.0000
63333 ENSG00000236053 LINC01067 long intergenic non-protein coding RNA 1067 -5.5236 0.0008

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000100991 TRPC4AP transient receptor potential cation channel subfamily C member 4 associated protein -5.5328 0.0000
63340 ENSG00000216360 Glyceraldehyde 3-phosphate dehydrogenase (GAPDH) pseudogene -5.5288 0.0000
63339 ENSG00000200345 RNU6-485P RNA, U6 small nuclear 485, pseudogene -5.5268 0.0000
63338 ENSG00000256134 EGLN3P1 egl-9 family hypoxia-inducible factor 3 pseudogene 1 -5.5236 0.0493
63337 ENSG00000253422 latexin (LXN) pseudogene -5.5236 0.0493
63336 ENSG00000253163 novel transcript -5.5236 0.0493
63335 ENSG00000239716 novel transcript -5.5236 0.0493
63334 ENSG00000237581 novel transcript -5.5236 0.0008
63333 ENSG00000236053 LINC01067 long intergenic non-protein coding RNA 1067 -5.5236 0.0008
63332 ENSG00000230864 novel transcript -5.5236 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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