Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849313

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849313


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5030206000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M9Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MI) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000233643 LINC02625 long intergenic non-protein coding RNA 2625 5.7279 0.0000
2 ENSG00000228707 novel transcript 5.5236 0.0000
3 ENSG00000269836 novel transcript, antisense MYO9B 5.5236 0.0000
4 ENSG00000276764 Metazoan signal recognition particle RNA 5.4594 0.0000
5 ENSG00000233651 novel transcript 5.3923 0.0000
6 ENSG00000207956 MIR579 microRNA 579 5.3219 0.0000
7 ENSG00000266977 novel transcript 5.3219 0.0000
8 ENSG00000222035 KIAA2012-AS1 KIAA2012 antisense RNA 1 5.2854 0.0000
9 ENSG00000237926 melanoma antigen pseudogene 5.2854 0.0000
10 ENSG00000275888 novel transcript, antisense to CSNK1D 5.2760 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000243904 RPSAP5 ribosomal protein SA pseudogene 5 -3.5909 0.0063
63127 ENSG00000146197 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 -3.5886 0.0014
63126 ENSG00000261196 CYP4A43P cytochrome P450 family 4 subfamily A member 43, pseudogene -3.5870 0.0001
63125 ENSG00000145642 SHISAL2B shisa like 2B -3.5856 0.0001
63124 ENSG00000282894 DUX4L33 double homeobox 4 like 33 (pseudogene) -3.5850 0.6155
63123 ENSG00000278069 MIR6072 microRNA 6072 -3.5850 0.2656
63122 ENSG00000272787 novel transcript -3.5850 0.0056
63121 ENSG00000271890 OR10AE1P olfactory receptor family 10 subfamily AE member 1 pseudogene -3.5850 0.6155
63120 ENSG00000269786 NADH dehydrogenase pseudogene -3.5850 0.0709
63119 ENSG00000267647 MAP1LC3P microtubule associated protein 1 light chain 3 pseudogene -3.5850 0.2656

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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