SHOGoiN Cell Methylome: GSM1849313

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849313


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5030206000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M9Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MI) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000233643 LINC02625 long intergenic non-protein coding RNA 2625 5.7279 0.0000
2 ENSG00000228707 novel transcript 5.5236 0.0000
3 ENSG00000269836 novel transcript, antisense MYO9B 5.5236 0.0000
4 ENSG00000276764 NA 5.4594 0.0000
5 ENSG00000233651 novel transcript 5.3923 0.0000
6 ENSG00000207956 MIR579 microRNA 579 5.3219 0.0000
7 ENSG00000266977 novel transcript 5.3219 0.0000
8 ENSG00000222035 KIAA2012-AS1 KIAA2012 antisense RNA 1 5.2854 0.0000
9 ENSG00000237926 melanoma antigen pseudogene 5.2854 0.0000
10 ENSG00000275888 novel transcript, antisense to CSNK1D 5.2760 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000243593 LINC02049 long intergenic non-protein coding RNA 2049 -3.8074 0.6298
63340 ENSG00000232930 novel transcript -3.8074 0.0001
63339 ENSG00000232884 novel transcript -3.8074 0.1723
63338 ENSG00000230153 chromosome X novel transcript -3.8074 0.0295
63337 ENSG00000228721 pseudogene similar to part of single-stranded DNA binding protein 1 (SSBP1) -3.8074 0.6298
63336 ENSG00000227716 novel transcript -3.8074 0.6298
63335 ENSG00000226644 uncharacterized LOC388780 -3.8074 0.6298
63334 ENSG00000226043 novel transcript -3.8074 0.1723
63333 ENSG00000225085 novel transcript -3.8074 0.1723
63332 ENSG00000224644 novel transcript -3.8074 0.6298

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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