SHOGoiN Cell Methylome: GSM1849314

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849314


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5030206000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M10Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MI) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000274883 NA 5.9307 0.0000
2 ENSG00000228650 novel transcript 5.6724 0.0000
3 ENSG00000279917 TEC 5.6724 0.0000
4 ENSG00000235357 LINC01621 long intergenic non-protein coding RNA 1621 5.6439 0.0000
5 ENSG00000232774 novel transcript 5.5546 0.0000
6 ENSG00000250548 LINC01303 long intergenic non-protein coding RNA 1303 5.5546 0.0000
7 ENSG00000242266 RN7SL456P RNA, 7SL, cytoplasmic 456, pseudogene 5.4919 0.0000
8 ENSG00000220660 ribosomal protein, large, P1 (RPLP1) pseudogene 5.4594 0.0000
9 ENSG00000252291 NA 5.4594 0.0000
10 ENSG00000206887 RNU6-1008P RNA, U6 small nuclear 1008, pseudogene 5.4263 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000213414 cell division cycle 37 homolog (S. cerevisiae) (CDC37 ) pseudogene -3.7950 0.0001
63340 ENSG00000133083 DCLK1 doublecortin like kinase 1 -3.7922 0.0000
63339 ENSG00000228716 DHFR dihydrofolate reductase -3.7920 0.0000
63338 ENSG00000113318 MSH3 mutS homolog 3 -3.7920 0.0000
63337 ENSG00000251273 LINC02228 long intergenic non-protein coding RNA 2228 -3.7888 0.0000
63336 ENSG00000245662 LINC02211 long intergenic non-protein coding RNA 2211 -3.7888 0.0000
63335 ENSG00000234511 C5orf58 chromosome 5 open reading frame 58 -3.7878 0.0001
63334 ENSG00000284447 MIR9-2 microRNA 9-2 -3.7865 0.0000
63333 ENSG00000243250 RPS6P16 ribosomal protein S6 pseudogene 16 -3.7844 0.0000
63332 ENSG00000203688 LINC02487 long intergenic non-protein coding RNA 2487 -3.7816 0.0008

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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