Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849314

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849314


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5030206000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M10Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MI) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000274883 Metazoan signal recognition particle RNA 5.9307 0.0000
2 ENSG00000228650 novel transcript 5.6724 0.0000
3 ENSG00000279917 TEC 5.6724 0.0000
4 ENSG00000235357 LINC01621 long intergenic non-protein coding RNA 1621 5.6439 0.0000
5 ENSG00000232774 novel transcript 5.5546 0.0000
6 ENSG00000250548 LINC01303 long intergenic non-protein coding RNA 1303 5.5546 0.0000
7 ENSG00000242266 RN7SL456P RNA, 7SL, cytoplasmic 456, pseudogene 5.4919 0.0000
8 ENSG00000220660 ribosomal protein, large, P1 (RPLP1) pseudogene 5.4594 0.0000
9 ENSG00000252291 NA 5.4594 0.0000
10 ENSG00000206887 RNU6-1008P RNA, U6 small nuclear 1008, pseudogene 5.4263 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000267582 novel transcript, antisense to ZSWIM4 -3.5850 0.0000
63127 ENSG00000265934 ARL2BPP1 ADP ribosylation factor like GTPase 2 binding protein pseudogene 1 -3.5850 0.0701
63126 ENSG00000264970 WEE1 homolog (S. pombe) (WEE1) pseudogene -3.5850 0.2629
63125 ENSG00000259534 novel transcript -3.5850 0.0701
63124 ENSG00000257237 maltase-glucoamylase (alpha-glucosidase) (MGAM) pseudogene -3.5850 0.6150
63123 ENSG00000256499 LINC02468 long intergenic non-protein coding RNA 2468 -3.5850 0.6150
63122 ENSG00000254767 OR2AL1P olfactory receptor family 2 subfamily AL member 1 pseudogene -3.5850 0.6150
63121 ENSG00000253693 novel transcript -3.5850 0.0091
63120 ENSG00000253682 novel transcript -3.5850 0.6150
63119 ENSG00000250688 TRAJ55 T cell receptor alpha joining 55 (pseudogene) -3.5850 0.6150

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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