SHOGoiN Cell Methylome: GSM1849315
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1849315 Profile download | 7180101000000000000000-755 | Sequence Read Archive | SRP062328 | SRP062328_M11 | Human oocyte DNA methylome | Methylome | Oocyte (germinal vesicle (GV) stage ) | Human | Genitalia | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000201885 | NA | 5.3576 | 0.0000 | |
| 2 | ENSG00000281721 | LINC01080 | long intergenic non-protein coding RNA 1080 | 5.0000 | 0.0000 |
| 3 | ENSG00000196704 | AMZ2 | archaelysin family metallopeptidase 2 | 4.8074 | 0.0000 |
| 4 | ENSG00000249407 | IL20RB-AS1 | IL20RB antisense RNA 1 | 4.7549 | 0.0000 |
| 5 | ENSG00000280368 | tec | 4.7004 | 0.0000 | |
| 6 | ENSG00000280449 | tec | 4.7004 | 0.0000 | |
| 7 | ENSG00000277818 | NA | 4.6733 | 0.0000 | |
| 8 | ENSG00000255548 | novel transcript | 4.6439 | 0.0000 | |
| 9 | ENSG00000255988 | TUBB4BP1 | tubulin beta 4B class IVb pseudogene 1 | 4.6439 | 0.0000 |
| 10 | ENSG00000256079 | family with sequence similarity 133, member B (FAM133B) pseudogene | 4.6439 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000211826 | TRDJ4 | T cell receptor delta joining 4 | -3.2849 | 0.2530 |
| 63340 | ENSG00000243655 | novel transcript, antisense to MTRNR2L1 | -3.2823 | 0.0000 | |
| 63339 | ENSG00000180340 | FZD2 | frizzled class receptor 2 | -3.2800 | 0.0060 |
| 63338 | ENSG00000220556 | 40S ribosomal protein S2 (RPS2) pseudogene | -3.2758 | 0.1151 | |
| 63337 | ENSG00000137808 | novel transcript | -3.2750 | 0.0007 | |
| 63336 | ENSG00000263453 | NA | -3.2739 | 0.0008 | |
| 63335 | ENSG00000266101 | novel transcript, antisense to CACNB1 | -3.2733 | 0.0000 | |
| 63334 | ENSG00000261066 | novel transcript | -3.2713 | 0.1645 | |
| 63333 | ENSG00000249786 | EAF1-AS1 | EAF1 antisense RNA 1 | -3.2713 | 0.1076 |
| 63332 | ENSG00000186008 | RPS4XP21 | ribosomal protein S4X pseudogene 21 | -3.2713 | 0.0093 |
