Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM1849315
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1849315
Profile download
7180101000000000000000-755
Sequence Read Archive
SRP062328
SRP062328_M11
Human oocyte DNA methylome
Methylome
Oocyte (germinal vesicle (GV) stage )
Human
Genitalia
Bisulfite-Seq (WGBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000201885
Y RNA
5.3576
0.0000
2
ENSG00000281721
LINC01080
long intergenic non-protein coding RNA 1080
5.0000
0.0000
3
ENSG00000196704
AMZ2
archaelysin family metallopeptidase 2
4.8074
0.0000
4
ENSG00000249407
IL20RB-AS1
IL20RB antisense RNA 1
4.7549
0.0000
5
ENSG00000280368
tec
4.7004
0.0000
6
ENSG00000280449
tec
4.7004
0.0000
7
ENSG00000277818
Y RNA
4.6733
0.0000
8
ENSG00000255548
novel transcript
4.6439
0.0000
9
ENSG00000255988
TUBB4BP1
TUBB4B pseudogene 1
4.6439
0.0000
10
ENSG00000256079
FAM133GP
family with sequence similarity 133 member G, pseudogene
4.6439
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000217159
LARP1P1
LARP1 pseudogene 1
-3.1504
0.2590
63127
ENSG00000189325
BNIP5
BCL2 interacting protein 5
-3.1480
0.0312
63126
ENSG00000102239
BRS3
bombesin receptor subtype 3
-3.1480
0.1094
63125
ENSG00000252686
RNU6-1234P
RNA, U6 small nuclear 1234, pseudogene
-3.1462
0.0471
63124
ENSG00000277468
NA
-3.1454
0.0319
63123
ENSG00000166091
CMTM5
CKLF like MARVEL transmembrane domain containing 5
-3.1440
0.0023
63122
ENSG00000272323
TTC23L-AS1
TTC23L antisense RNA 1
-3.1415
0.0053
63121
ENSG00000205838
TTC23L
tetratricopeptide repeat domain 23 like
-3.1415
0.0053
63120
ENSG00000139211
AMIGO2
adhesion molecule with Ig like domain 2
-3.1378
0.0018
63119
ENSG00000227488
GAGE12D
G antigen 12D
-3.1374
0.0203
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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