Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849315

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849315


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7180101000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M11Human oocyte DNA methylomeMethylomeOocyte (germinal vesicle (GV) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000201885 Y RNA 5.3576 0.0000
2 ENSG00000281721 LINC01080 long intergenic non-protein coding RNA 1080 5.0000 0.0000
3 ENSG00000196704 AMZ2 archaelysin family metallopeptidase 2 4.8074 0.0000
4 ENSG00000249407 IL20RB-AS1 IL20RB antisense RNA 1 4.7549 0.0000
5 ENSG00000280368 tec 4.7004 0.0000
6 ENSG00000280449 tec 4.7004 0.0000
7 ENSG00000277818 Y RNA 4.6733 0.0000
8 ENSG00000255548 novel transcript 4.6439 0.0000
9 ENSG00000255988 TUBB4BP1 TUBB4B pseudogene 1 4.6439 0.0000
10 ENSG00000256079 FAM133GP family with sequence similarity 133 member G, pseudogene 4.6439 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000217159 LARP1P1 LARP1 pseudogene 1 -3.1504 0.2590
63127 ENSG00000189325 BNIP5 BCL2 interacting protein 5 -3.1480 0.0312
63126 ENSG00000102239 BRS3 bombesin receptor subtype 3 -3.1480 0.1094
63125 ENSG00000252686 RNU6-1234P RNA, U6 small nuclear 1234, pseudogene -3.1462 0.0471
63124 ENSG00000277468 NA -3.1454 0.0319
63123 ENSG00000166091 CMTM5 CKLF like MARVEL transmembrane domain containing 5 -3.1440 0.0023
63122 ENSG00000272323 TTC23L-AS1 TTC23L antisense RNA 1 -3.1415 0.0053
63121 ENSG00000205838 TTC23L tetratricopeptide repeat domain 23 like -3.1415 0.0053
63120 ENSG00000139211 AMIGO2 adhesion molecule with Ig like domain 2 -3.1378 0.0018
63119 ENSG00000227488 GAGE12D G antigen 12D -3.1374 0.0203

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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