Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849315

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1849315 Profile download	7180101000000000000000-755	Sequence Read Archive	SRP062328	SRP062328_M11	Human oocyte DNA methylome	Methylome	Oocyte (germinal vesicle (GV) stage )	Human	Genitalia	Bisulfite-Seq (WGBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000201885		Y RNA	5.3576	0.0000
2	ENSG00000281721	LINC01080	long intergenic non-protein coding RNA 1080	5.0000	0.0000
3	ENSG00000196704	AMZ2	archaelysin family metallopeptidase 2	4.8074	0.0000
4	ENSG00000249407	IL20RB-AS1	IL20RB antisense RNA 1	4.7549	0.0000
5	ENSG00000280368		tec	4.7004	0.0000
6	ENSG00000280449		tec	4.7004	0.0000
7	ENSG00000277818		Y RNA	4.6733	0.0000
8	ENSG00000255548		novel transcript	4.6439	0.0000
9	ENSG00000255988	TUBB4BP1	TUBB4B pseudogene 1	4.6439	0.0000
10	ENSG00000256079	FAM133GP	family with sequence similarity 133 member G, pseudogene	4.6439	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000217159	LARP1P1	LARP1 pseudogene 1	-3.1504	0.2590
63127	ENSG00000189325	BNIP5	BCL2 interacting protein 5	-3.1480	0.0312
63126	ENSG00000102239	BRS3	bombesin receptor subtype 3	-3.1480	0.1094
63125	ENSG00000252686	RNU6-1234P	RNA, U6 small nuclear 1234, pseudogene	-3.1462	0.0471
63124	ENSG00000277468		NA	-3.1454	0.0319
63123	ENSG00000166091	CMTM5	CKLF like MARVEL transmembrane domain containing 5	-3.1440	0.0023
63122	ENSG00000272323	TTC23L-AS1	TTC23L antisense RNA 1	-3.1415	0.0053
63121	ENSG00000205838	TTC23L	tetratricopeptide repeat domain 23 like	-3.1415	0.0053
63120	ENSG00000139211	AMIGO2	adhesion molecule with Ig like domain 2	-3.1378	0.0018
63119	ENSG00000227488	GAGE12D	G antigen 12D	-3.1374	0.0203

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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