Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849316

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849316


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7180101000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M12Human oocyte DNA methylomeMethylomeOocyte (germinal vesicle (GV) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000206697 RNY1P8 RNY1 pseudogene 8 7.2946 0.0000
2 ENSG00000184414 IRS3P insulin receptor substrate 3, pseudogene 7.2854 0.0000
3 ENSG00000227264 ACTR3BP5 ACTR3B pseudogene 5 6.9773 0.0000
4 ENSG00000227521 TUBB4BP8 TUBB4B pseudogene 8 6.9069 0.0000
5 ENSG00000231857 MORF4L1P5 mortality factor 4 like 1 pseudogene 5 6.8455 0.0000
6 ENSG00000181023 OR56B1 olfactory receptor family 56 subfamily B member 1 6.8202 0.0000
7 ENSG00000228638 FCF1P2 FCF1 pseudogene 2 6.7961 0.0000
8 ENSG00000239439 RFKP2 riboflavin kinase pseudogene 2 6.7347 0.0000
9 ENSG00000235467 RPL10AP5 ribosomal protein L10a pseudogene 5 6.6582 0.0000
10 ENSG00000237672 KRR1P1 KRR1 pseudogene 1 6.6450 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000102401 ARMCX3 armadillo repeat containing X-linked 3 -4.6439 0.0482
63127 ENSG00000076248 UNG uracil DNA glycosylase -4.6439 0.4159
63126 ENSG00000274659 LINC02371 long intergenic non-protein coding RNA 2371 -4.6395 0.0000
63125 ENSG00000255091 novel transcript -4.6376 0.0000
63124 ENSG00000260953 novel transcript -4.6376 0.0000
63123 ENSG00000203727 SAMD5 sterile alpha motif domain containing 5 -4.6347 0.1354
63122 ENSG00000170122 FOXD4 forkhead box D4 -4.6346 0.0000
63121 ENSG00000248876 novel transcript -4.6334 0.0045
63120 ENSG00000271825 novel transcript, antisense to NFE2L2 -4.6319 0.0000
63119 ENSG00000275094 ribosomal L24 domain containing 1 (RSL24D1) pseudogene -4.6292 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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