Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849316

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1849316 Profile download	7180101000000000000000-755	Sequence Read Archive	SRP062328	SRP062328_M12	Human oocyte DNA methylome	Methylome	Oocyte (germinal vesicle (GV) stage )	Human	Genitalia	Bisulfite-Seq (WGBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000206697	RNY1P8	RNY1 pseudogene 8	7.2946	0.0000
2	ENSG00000184414	IRS3P	insulin receptor substrate 3, pseudogene	7.2854	0.0000
3	ENSG00000227264	ACTR3BP5	ACTR3B pseudogene 5	6.9773	0.0000
4	ENSG00000227521	TUBB4BP8	TUBB4B pseudogene 8	6.9069	0.0000
5	ENSG00000231857	MORF4L1P5	mortality factor 4 like 1 pseudogene 5	6.8455	0.0000
6	ENSG00000181023	OR56B1	olfactory receptor family 56 subfamily B member 1	6.8202	0.0000
7	ENSG00000228638	FCF1P2	FCF1 pseudogene 2	6.7961	0.0000
8	ENSG00000239439	RFKP2	riboflavin kinase pseudogene 2	6.7347	0.0000
9	ENSG00000235467	RPL10AP5	ribosomal protein L10a pseudogene 5	6.6582	0.0000
10	ENSG00000237672	KRR1P1	KRR1 pseudogene 1	6.6450	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000102401	ARMCX3	armadillo repeat containing X-linked 3	-4.6439	0.0482
63127	ENSG00000076248	UNG	uracil DNA glycosylase	-4.6439	0.4159
63126	ENSG00000274659	LINC02371	long intergenic non-protein coding RNA 2371	-4.6395	0.0000
63125	ENSG00000255091		novel transcript	-4.6376	0.0000
63124	ENSG00000260953		novel transcript	-4.6376	0.0000
63123	ENSG00000203727	SAMD5	sterile alpha motif domain containing 5	-4.6347	0.1354
63122	ENSG00000170122	FOXD4	forkhead box D4	-4.6346	0.0000
63121	ENSG00000248876		novel transcript	-4.6334	0.0045
63120	ENSG00000271825		novel transcript, antisense to NFE2L2	-4.6319	0.0000
63119	ENSG00000275094		ribosomal L24 domain containing 1 (RSL24D1) pseudogene	-4.6292	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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