Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM1849316
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1849316
Profile download
7180101000000000000000-755
Sequence Read Archive
SRP062328
SRP062328_M12
Human oocyte DNA methylome
Methylome
Oocyte (germinal vesicle (GV) stage )
Human
Genitalia
Bisulfite-Seq (WGBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000206697
RNY1P8
RNY1 pseudogene 8
7.2946
0.0000
2
ENSG00000184414
IRS3P
insulin receptor substrate 3, pseudogene
7.2854
0.0000
3
ENSG00000227264
ACTR3BP5
ACTR3B pseudogene 5
6.9773
0.0000
4
ENSG00000227521
TUBB4BP8
TUBB4B pseudogene 8
6.9069
0.0000
5
ENSG00000231857
MORF4L1P5
mortality factor 4 like 1 pseudogene 5
6.8455
0.0000
6
ENSG00000181023
OR56B1
olfactory receptor family 56 subfamily B member 1
6.8202
0.0000
7
ENSG00000228638
FCF1P2
FCF1 pseudogene 2
6.7961
0.0000
8
ENSG00000239439
RFKP2
riboflavin kinase pseudogene 2
6.7347
0.0000
9
ENSG00000235467
RPL10AP5
ribosomal protein L10a pseudogene 5
6.6582
0.0000
10
ENSG00000237672
KRR1P1
KRR1 pseudogene 1
6.6450
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000102401
ARMCX3
armadillo repeat containing X-linked 3
-4.6439
0.0482
63127
ENSG00000076248
UNG
uracil DNA glycosylase
-4.6439
0.4159
63126
ENSG00000274659
LINC02371
long intergenic non-protein coding RNA 2371
-4.6395
0.0000
63125
ENSG00000255091
novel transcript
-4.6376
0.0000
63124
ENSG00000260953
novel transcript
-4.6376
0.0000
63123
ENSG00000203727
SAMD5
sterile alpha motif domain containing 5
-4.6347
0.1354
63122
ENSG00000170122
FOXD4
forkhead box D4
-4.6346
0.0000
63121
ENSG00000248876
novel transcript
-4.6334
0.0045
63120
ENSG00000271825
novel transcript, antisense to NFE2L2
-4.6319
0.0000
63119
ENSG00000275094
ribosomal L24 domain containing 1 (RSL24D1) pseudogene
-4.6292
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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