SHOGoiN Cell Methylome: GSM1849316
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1849316 Profile download | 7180101000000000000000-755 | Sequence Read Archive | SRP062328 | SRP062328_M12 | Human oocyte DNA methylome | Methylome | Oocyte (germinal vesicle (GV) stage ) | Human | Genitalia | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000206697 | RNY1P8 | RNA, Ro-associated Y1 pseudogene 8 | 7.2946 | 0.0000 |
| 2 | ENSG00000184414 | IRS3P | insulin receptor substrate 3, pseudogene | 7.2854 | 0.0000 |
| 3 | ENSG00000227264 | ACTR3BP5 | ACTR3B pseudogene 5 | 6.9773 | 0.0000 |
| 4 | ENSG00000227521 | NA | 6.9069 | 0.0000 | |
| 5 | ENSG00000231857 | MORF4L1P5 | mortality factor 4 like 1 pseudogene 5 | 6.8455 | 0.0000 |
| 6 | ENSG00000181023 | OR56B1 | olfactory receptor family 56 subfamily B member 1 | 6.8202 | 0.0000 |
| 7 | ENSG00000228638 | FCF1P2 | FCF1 pseudogene 2 | 6.7961 | 0.0000 |
| 8 | ENSG00000239439 | RFKP2 | riboflavin kinase pseudogene 2 | 6.7347 | 0.0000 |
| 9 | ENSG00000235467 | RPL10AP5 | ribosomal protein L10a pseudogene 5 | 6.6582 | 0.0000 |
| 10 | ENSG00000237672 | KRR1P1 | KRR1, small subunit processome component homolog pseudogene 1 | 6.6450 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63647 | ENSG00000237936 | NA | -5.3576 | 0.1166 | |
| 63646 | ENSG00000237593 | NA | -5.3576 | 0.0000 | |
| 63645 | ENSG00000235016 | SEMA3F-AS1 | SEMA3F antisense RNA 1 | -5.3576 | 0.0000 |
| 63644 | ENSG00000232629 | HLA-DQB2 | major histocompatibility complex, class II, DQ beta 2 | -5.3576 | 0.1166 |
| 63643 | ENSG00000222810 | RNU2-68P | RNA, U2 small nuclear 68, pseudogene | -5.3576 | 0.1166 |
| 63642 | ENSG00000207299 | NA | -5.3576 | 0.1166 | |
| 63641 | ENSG00000206785 | SNORA15B-1 | small nucleolar RNA, H/ACA box 15B-1 | -5.3576 | 0.1166 |
| 63640 | ENSG00000202000 | RNU1-36P | RNA, U1 small nuclear 36, pseudogene | -5.3576 | 0.0042 |
| 63639 | ENSG00000200650 | RNA5SP114 | RNA, 5S ribosomal pseudogene 114 | -5.3576 | 0.1166 |
| 63638 | ENSG00000196507 | TCEAL3 | transcription elongation factor A like 3 | -5.3576 | 0.1166 |
