SHOGoiN Cell Methylome: GSM1849316

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849316


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7180101000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M12Human oocyte DNA methylomeMethylomeOocyte (germinal vesicle (GV) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000206697 RNY1P8 RNY1 pseudogene 8 7.2946 0.0000
2 ENSG00000184414 IRS3P insulin receptor substrate 3, pseudogene 7.2854 0.0000
3 ENSG00000227264 ACTR3BP5 ACTR3B pseudogene 5 6.9773 0.0000
4 ENSG00000227521 tubulin, beta 8 class VIII (TUBB8) pseudogene 6.9069 0.0000
5 ENSG00000231857 MORF4L1P5 mortality factor 4 like 1 pseudogene 5 6.8455 0.0000
6 ENSG00000181023 OR56B1 olfactory receptor family 56 subfamily B member 1 6.8202 0.0000
7 ENSG00000228638 FCF1P2 FCF1 pseudogene 2 6.7961 0.0000
8 ENSG00000239439 RFKP2 riboflavin kinase pseudogene 2 6.7347 0.0000
9 ENSG00000235467 RPL10AP5 ribosomal protein L10a pseudogene 5 6.6582 0.0000
10 ENSG00000237672 KRR1P1 KRR1 pseudogene 1 6.6450 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000202395 RN7SKP1 RN7SK pseudogene 1 -4.8743 0.0028
63340 ENSG00000147164 SNX12 sorting nexin 12 -4.8722 0.0000
63339 ENSG00000260046 novel transcript -4.8714 0.0000
63338 ENSG00000238606 RNU7-7P RNA, U7 small nuclear 7 pseudogene -4.8690 0.0062
63337 ENSG00000203995 ZYG11A zyg-11 family member A, cell cycle regulator -4.8680 0.0000
63336 ENSG00000257228 novel transcript -4.8661 0.0063
63335 ENSG00000282097 novel transcript -4.8629 0.0002
63334 ENSG00000283417 novel transcript -4.8580 0.2636
63333 ENSG00000259708 novel transcript, antisense to DNAJA4 -4.8580 0.2636
63332 ENSG00000258622 endogenous retrovirus group FRD, member 1 (ERVFRD-1) pseudogene -4.8580 0.2636

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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