SHOGoiN Cell Methylome: GSM1849316
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1849316 Profile download | 7180101000000000000000-755 | Sequence Read Archive | SRP062328 | SRP062328_M12 | Human oocyte DNA methylome | Methylome | Oocyte (germinal vesicle (GV) stage ) | Human | Genitalia | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000206697 | RNY1P8 | RNY1 pseudogene 8 | 7.2946 | 0.0000 |
| 2 | ENSG00000184414 | IRS3P | insulin receptor substrate 3, pseudogene | 7.2854 | 0.0000 |
| 3 | ENSG00000227264 | ACTR3BP5 | ACTR3B pseudogene 5 | 6.9773 | 0.0000 |
| 4 | ENSG00000227521 | tubulin, beta 8 class VIII (TUBB8) pseudogene | 6.9069 | 0.0000 | |
| 5 | ENSG00000231857 | MORF4L1P5 | mortality factor 4 like 1 pseudogene 5 | 6.8455 | 0.0000 |
| 6 | ENSG00000181023 | OR56B1 | olfactory receptor family 56 subfamily B member 1 | 6.8202 | 0.0000 |
| 7 | ENSG00000228638 | FCF1P2 | FCF1 pseudogene 2 | 6.7961 | 0.0000 |
| 8 | ENSG00000239439 | RFKP2 | riboflavin kinase pseudogene 2 | 6.7347 | 0.0000 |
| 9 | ENSG00000235467 | RPL10AP5 | ribosomal protein L10a pseudogene 5 | 6.6582 | 0.0000 |
| 10 | ENSG00000237672 | KRR1P1 | KRR1 pseudogene 1 | 6.6450 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000202395 | RN7SKP1 | RN7SK pseudogene 1 | -4.8743 | 0.0028 |
| 63340 | ENSG00000147164 | SNX12 | sorting nexin 12 | -4.8722 | 0.0000 |
| 63339 | ENSG00000260046 | novel transcript | -4.8714 | 0.0000 | |
| 63338 | ENSG00000238606 | RNU7-7P | RNA, U7 small nuclear 7 pseudogene | -4.8690 | 0.0062 |
| 63337 | ENSG00000203995 | ZYG11A | zyg-11 family member A, cell cycle regulator | -4.8680 | 0.0000 |
| 63336 | ENSG00000257228 | novel transcript | -4.8661 | 0.0063 | |
| 63335 | ENSG00000282097 | novel transcript | -4.8629 | 0.0002 | |
| 63334 | ENSG00000283417 | novel transcript | -4.8580 | 0.2636 | |
| 63333 | ENSG00000259708 | novel transcript, antisense to DNAJA4 | -4.8580 | 0.2636 | |
| 63332 | ENSG00000258622 | endogenous retrovirus group FRD, member 1 (ERVFRD-1) pseudogene | -4.8580 | 0.2636 |
