Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849317

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849317


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5030206000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M13Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MI) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000136826 KLF4 Kruppel like factor 4 5.1293 0.0000
2 ENSG00000200257 RNU6-97P RNA, U6 small nuclear 97, pseudogene 5.0875 0.0000
3 ENSG00000213361 ribosomal protein L36 (RPL36) pseudogene 5.0614 0.0000
4 ENSG00000087589 CASS4 Cas scaffold protein family member 4 5.0000 0.0000
5 ENSG00000230546 pseudogene similar to part of WAP four-disulfide core domain 3 (WFDC3) 5.0000 0.0000
6 ENSG00000264358 MIR3122 microRNA 3122 5.0000 0.0000
7 ENSG00000253716 MINCR MYC-induced long non-coding RNA 4.9069 0.0000
8 ENSG00000273243 novel transcript 4.9069 0.0000
9 ENSG00000253808 IGHVII-46-1 immunoglobulin heavy variable (II)-46-1 (pseudogene) 4.8580 0.0000
10 ENSG00000225113 novel transcript 4.8204 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000211451 GNRHR2 gonadotropin releasing hormone receptor 2 (pseudogene) -3.3219 0.6103
63127 ENSG00000207503 NA -3.3219 0.6103
63126 ENSG00000205871 RPS3AP47 RPS3A pseudogene 47 -3.3219 0.0134
63124 ENSG00000199282 NA -3.3219 0.1688
63123 ENSG00000198482 ZNF808 zinc finger protein 808 -3.3219 0.0290
63122 ENSG00000195024 RNU1-15P RNA, U1 small nuclear 15, pseudogene -3.3219 0.6103
63121 ENSG00000189014 SHLD2P3 shieldin complex subunit 2 pseudogene 3 -3.3219 0.6103
63120 ENSG00000180875 GREM2 gremlin 2, DAN family BMP antagonist -3.3219 0.2506
63119 ENSG00000179615 OR2AP1 olfactory receptor family 2 subfamily AP member 1 -3.3219 0.6103
10 ENSG00000225113 novel transcript 4.8204 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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