SHOGoiN Cell Methylome: GSM1849317
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1849317 Profile download | 5030206000000000000000-755 | Sequence Read Archive | SRP062328 | SRP062328_M13 | Human oocyte DNA methylome | Methylome | Oocyte (mature metaphase (MI) stage ) | Human | Genitalia | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000136826 | KLF4 | Kruppel like factor 4 | 5.1293 | 0.0000 |
| 2 | ENSG00000200257 | RNU6-97P | RNA, U6 small nuclear 97, pseudogene | 5.0875 | 0.0000 |
| 3 | ENSG00000213361 | NA | 5.0614 | 0.0000 | |
| 4 | ENSG00000087589 | CASS4 | Cas scaffolding protein family member 4 | 5.0000 | 0.0000 |
| 5 | ENSG00000230546 | NA | 5.0000 | 0.0000 | |
| 6 | ENSG00000264358 | MIR3122 | microRNA 3122 | 5.0000 | 0.0000 |
| 7 | ENSG00000253716 | MINCR | MYC-induced long non-coding RNA | 4.9069 | 0.0000 |
| 8 | ENSG00000273243 | NA | 4.9069 | 0.0000 | |
| 9 | ENSG00000253808 | IGHVII-46-1 | immunoglobulin heavy variable (II)-46-1 (pseudogene) | 4.8580 | 0.0000 |
| 10 | ENSG00000225113 | NA | 4.8204 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63647 | ENSG00000187959 | CPSF4L | cleavage and polyadenylation specific factor 4 like | -3.9069 | 0.3892 |
| 63646 | ENSG00000160229 | ZNF66 | zinc finger protein 66 | -3.9069 | 0.3892 |
| 63645 | ENSG00000042445 | RETSAT | retinol saturase | -3.9069 | 0.0670 |
| 63644 | ENSG00000172428 | COPS9 | COP9 signalosome subunit 9 | -3.9043 | 0.0007 |
| 63643 | ENSG00000283213 | NA | -3.8973 | 0.0000 | |
| 63642 | ENSG00000122254 | HS3ST2 | heparan sulfate-glucosamine 3-sulfotransferase 2 | -3.8973 | 0.0000 |
| 63641 | ENSG00000265673 | MIR4508 | microRNA 4508 | -3.8940 | 0.0670 |
| 63640 | ENSG00000248489 | LINC02062 | long intergenic non-protein coding RNA 2062 | -3.8903 | 0.0000 |
| 63639 | ENSG00000197251 | LINC00336 | long intergenic non-protein coding RNA 336 | -3.8903 | 0.0001 |
| 63638 | ENSG00000262445 | NA | -3.8889 | 0.0000 |
