Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM1849317
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1849317
Profile download
5030206000000000000000-755
Sequence Read Archive
SRP062328
SRP062328_M13
Human oocyte DNA methylome
Methylome
Oocyte (mature metaphase (MI) stage )
Human
Genitalia
Bisulfite-Seq (WGBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000136826
KLF4
Kruppel like factor 4
5.1293
0.0000
2
ENSG00000200257
RNU6-97P
RNA, U6 small nuclear 97, pseudogene
5.0875
0.0000
3
ENSG00000213361
ribosomal protein L36 (RPL36) pseudogene
5.0614
0.0000
4
ENSG00000087589
CASS4
Cas scaffold protein family member 4
5.0000
0.0000
5
ENSG00000230546
pseudogene similar to part of WAP four-disulfide core domain 3 (WFDC3)
5.0000
0.0000
6
ENSG00000264358
MIR3122
microRNA 3122
5.0000
0.0000
7
ENSG00000253716
MINCR
MYC-induced long non-coding RNA
4.9069
0.0000
8
ENSG00000273243
novel transcript
4.9069
0.0000
9
ENSG00000253808
IGHVII-46-1
immunoglobulin heavy variable (II)-46-1 (pseudogene)
4.8580
0.0000
10
ENSG00000225113
novel transcript
4.8204
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000211451
GNRHR2
gonadotropin releasing hormone receptor 2 (pseudogene)
-3.3219
0.6103
63127
ENSG00000207503
NA
-3.3219
0.6103
63126
ENSG00000205871
RPS3AP47
RPS3A pseudogene 47
-3.3219
0.0134
63124
ENSG00000199282
NA
-3.3219
0.1688
63123
ENSG00000198482
ZNF808
zinc finger protein 808
-3.3219
0.0290
63122
ENSG00000195024
RNU1-15P
RNA, U1 small nuclear 15, pseudogene
-3.3219
0.6103
63121
ENSG00000189014
SHLD2P3
shieldin complex subunit 2 pseudogene 3
-3.3219
0.6103
63120
ENSG00000180875
GREM2
gremlin 2, DAN family BMP antagonist
-3.3219
0.2506
63119
ENSG00000179615
OR2AP1
olfactory receptor family 2 subfamily AP member 1
-3.3219
0.6103
10
ENSG00000225113
novel transcript
4.8204
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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