Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849317

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1849317 Profile download	5030206000000000000000-755	Sequence Read Archive	SRP062328	SRP062328_M13	Human oocyte DNA methylome	Methylome	Oocyte (mature metaphase (MI) stage )	Human	Genitalia	Bisulfite-Seq (WGBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000136826	KLF4	Kruppel like factor 4	5.1293	0.0000
2	ENSG00000200257	RNU6-97P	RNA, U6 small nuclear 97, pseudogene	5.0875	0.0000
3	ENSG00000213361		ribosomal protein L36 (RPL36) pseudogene	5.0614	0.0000
4	ENSG00000087589	CASS4	Cas scaffold protein family member 4	5.0000	0.0000
5	ENSG00000230546		pseudogene similar to part of WAP four-disulfide core domain 3 (WFDC3)	5.0000	0.0000
6	ENSG00000264358	MIR3122	microRNA 3122	5.0000	0.0000
7	ENSG00000253716	MINCR	MYC-induced long non-coding RNA	4.9069	0.0000
8	ENSG00000273243		novel transcript	4.9069	0.0000
9	ENSG00000253808	IGHVII-46-1	immunoglobulin heavy variable (II)-46-1 (pseudogene)	4.8580	0.0000
10	ENSG00000225113		novel transcript	4.8204	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000211451	GNRHR2	gonadotropin releasing hormone receptor 2 (pseudogene)	-3.3219	0.6103
63127	ENSG00000207503		NA	-3.3219	0.6103
63126	ENSG00000205871	RPS3AP47	RPS3A pseudogene 47	-3.3219	0.0134
63124	ENSG00000199282		NA	-3.3219	0.1688
63123	ENSG00000198482	ZNF808	zinc finger protein 808	-3.3219	0.0290
63122	ENSG00000195024	RNU1-15P	RNA, U1 small nuclear 15, pseudogene	-3.3219	0.6103
63121	ENSG00000189014	SHLD2P3	shieldin complex subunit 2 pseudogene 3	-3.3219	0.6103
63120	ENSG00000180875	GREM2	gremlin 2, DAN family BMP antagonist	-3.3219	0.2506
63119	ENSG00000179615	OR2AP1	olfactory receptor family 2 subfamily AP member 1	-3.3219	0.6103
10	ENSG00000225113		novel transcript	4.8204	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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