SHOGoiN Cell Methylome: GSM1849317
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1849317 Profile download | 5030206000000000000000-755 | Sequence Read Archive | SRP062328 | SRP062328_M13 | Human oocyte DNA methylome | Methylome | Oocyte (mature metaphase (MI) stage ) | Human | Genitalia | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000136826 | KLF4 | Kruppel like factor 4 | 5.1293 | 0.0000 |
| 2 | ENSG00000200257 | RNU6-97P | RNA, U6 small nuclear 97, pseudogene | 5.0875 | 0.0000 |
| 3 | ENSG00000213361 | ribosomal protein L36 (RPL36) pseudogene | 5.0614 | 0.0000 | |
| 4 | ENSG00000087589 | CASS4 | Cas scaffold protein family member 4 | 5.0000 | 0.0000 |
| 5 | ENSG00000230546 | pseudogene similar to part of WAP four-disulfide core domain 3 (WFDC3) | 5.0000 | 0.0000 | |
| 6 | ENSG00000264358 | MIR3122 | microRNA 3122 | 5.0000 | 0.0000 |
| 7 | ENSG00000253716 | MINCR | MYC-induced long non-coding RNA | 4.9069 | 0.0000 |
| 8 | ENSG00000273243 | novel transcript | 4.9069 | 0.0000 | |
| 9 | ENSG00000253808 | IGHVII-46-1 | immunoglobulin heavy variable (II)-46-1 (pseudogene) | 4.8580 | 0.0000 |
| 10 | ENSG00000225113 | novel transcript | 4.8204 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000257433 | novel transcript, antisense to ENDOU and RAPGEF3 | -3.4594 | 0.0707 | |
| 63340 | ENSG00000256695 | novel transcript | -3.4594 | 0.0707 | |
| 63339 | ENSG00000255140 | OR5BN2P | olfactory receptor family 5 subfamily BN member 2 pseudogene | -3.4594 | 0.1584 |
| 63338 | ENSG00000255063 | RNA binding motif protein, X-linked (RBMX) pseudogene | -3.4594 | 0.1584 | |
| 63337 | ENSG00000254786 | Glycine N-acyltransferase-like protein 1 (GLYATL1) pseudogene | -3.4594 | 0.6144 | |
| 63336 | ENSG00000254384 | MTND6P19 | MT-ND6 pseudogene 19 | -3.4594 | 0.6144 |
| 63335 | ENSG00000254048 | novel transcript | -3.4594 | 0.1584 | |
| 63334 | ENSG00000253685 | MTND5P41 | MT-ND5 pseudogene 41 | -3.4594 | 0.6144 |
| 63333 | ENSG00000253504 | MTCYBP19 | MT-CYB pseudogene 19 | -3.4594 | 0.6144 |
| 63332 | ENSG00000253028 | NA | -3.4594 | 0.6144 |
