SHOGoiN Cell Methylome: GSM1849317

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849317


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5030206000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M13Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MI) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000136826 KLF4 Kruppel like factor 4 5.1293 0.0000
2 ENSG00000200257 RNU6-97P RNA, U6 small nuclear 97, pseudogene 5.0875 0.0000
3 ENSG00000213361 ribosomal protein L36 (RPL36) pseudogene 5.0614 0.0000
4 ENSG00000087589 CASS4 Cas scaffold protein family member 4 5.0000 0.0000
5 ENSG00000230546 pseudogene similar to part of WAP four-disulfide core domain 3 (WFDC3) 5.0000 0.0000
6 ENSG00000264358 MIR3122 microRNA 3122 5.0000 0.0000
7 ENSG00000253716 MINCR MYC-induced long non-coding RNA 4.9069 0.0000
8 ENSG00000273243 novel transcript 4.9069 0.0000
9 ENSG00000253808 IGHVII-46-1 immunoglobulin heavy variable (II)-46-1 (pseudogene) 4.8580 0.0000
10 ENSG00000225113 novel transcript 4.8204 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000257433 novel transcript, antisense to ENDOU and RAPGEF3 -3.4594 0.0707
63340 ENSG00000256695 novel transcript -3.4594 0.0707
63339 ENSG00000255140 OR5BN2P olfactory receptor family 5 subfamily BN member 2 pseudogene -3.4594 0.1584
63338 ENSG00000255063 RNA binding motif protein, X-linked (RBMX) pseudogene -3.4594 0.1584
63337 ENSG00000254786 Glycine N-acyltransferase-like protein 1 (GLYATL1) pseudogene -3.4594 0.6144
63336 ENSG00000254384 MTND6P19 MT-ND6 pseudogene 19 -3.4594 0.6144
63335 ENSG00000254048 novel transcript -3.4594 0.1584
63334 ENSG00000253685 MTND5P41 MT-ND5 pseudogene 41 -3.4594 0.6144
63333 ENSG00000253504 MTCYBP19 MT-CYB pseudogene 19 -3.4594 0.6144
63332 ENSG00000253028 NA -3.4594 0.6144

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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