SHOGoiN Cell Methylome: GSM1849318

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849318


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7180101000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M14Human oocyte DNA methylomeMethylomeOocyte (germinal vesicle (GV) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000225591 ribosomal protein S27 (metallopanstimulin 1) (RPS27) pseudogene 4.7004 0.0000
2 ENSG00000275024 novel transcript, antisense to VWA2 4.6439 0.0000
3 ENSG00000147885 IFNA16 interferon alpha 16 4.5236 0.0000
4 ENSG00000253389 novel transcript, antisense to ANK1 4.4594 0.0000
5 ENSG00000274705 MIR486-1 microRNA 486-1 4.4594 0.0000
6 ENSG00000283450 MIR486-2 microRNA 486-2 4.4594 0.0000
7 ENSG00000201431 RNU6-1277P RNA, U6 small nuclear 1277, pseudogene 4.4259 0.0000
8 ENSG00000235746 CTBP2P2 C-terminal binding protein 2 pseudogene 2 4.3923 0.0000
9 ENSG00000251221 LINC01337 long intergenic non-protein coding RNA 1337 4.3747 0.0000
10 ENSG00000228999 long intergenic non-protein coding RNA 1830 4.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000229067 ribosomal protein L39 (RPL39) pseudogene -3.0000 0.4064
63340 ENSG00000229027 HSFY1P1 HSFY1 pseudogene 1 -3.0000 1.0000
63339 ENSG00000228658 novel transcript -3.0000 0.4064
63338 ENSG00000227684 CROCCP4 CROCC pseudogene 4 -3.0000 0.0004
63337 ENSG00000226928 RPS14P4 ribosomal protein S14 pseudogene 4 -3.0000 1.0000
63336 ENSG00000226925 IL1R1-AS1 IL1R1 antisense RNA 1 -3.0000 0.6208
63335 ENSG00000226757 novel transcript, antisense to TMEM155 -3.0000 1.0000
63334 ENSG00000225856 PCNPP2 PEST containing nuclear protein pseudogene 2 -3.0000 0.4064
63333 ENSG00000224944 CASC6 cancer susceptibility 6 -3.0000 0.6208
63332 ENSG00000224296 MRPL49P1 mitochondrial ribosomal protein L49 pseudogene 1 -3.0000 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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