SHOGoiN Cell Methylome: GSM1849318
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1849318 Profile download | 7180101000000000000000-755 | Sequence Read Archive | SRP062328 | SRP062328_M14 | Human oocyte DNA methylome | Methylome | Oocyte (germinal vesicle (GV) stage ) | Human | Genitalia | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000225591 | ribosomal protein S27 (metallopanstimulin 1) (RPS27) pseudogene | 4.7004 | 0.0000 | |
| 2 | ENSG00000275024 | novel transcript, antisense to VWA2 | 4.6439 | 0.0000 | |
| 3 | ENSG00000147885 | IFNA16 | interferon alpha 16 | 4.5236 | 0.0000 |
| 4 | ENSG00000253389 | novel transcript, antisense to ANK1 | 4.4594 | 0.0000 | |
| 5 | ENSG00000274705 | MIR486-1 | microRNA 486-1 | 4.4594 | 0.0000 |
| 6 | ENSG00000283450 | MIR486-2 | microRNA 486-2 | 4.4594 | 0.0000 |
| 7 | ENSG00000201431 | RNU6-1277P | RNA, U6 small nuclear 1277, pseudogene | 4.4259 | 0.0000 |
| 8 | ENSG00000235746 | CTBP2P2 | C-terminal binding protein 2 pseudogene 2 | 4.3923 | 0.0000 |
| 9 | ENSG00000251221 | LINC01337 | long intergenic non-protein coding RNA 1337 | 4.3747 | 0.0000 |
| 10 | ENSG00000228999 | long intergenic non-protein coding RNA 1830 | 4.3219 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000229067 | ribosomal protein L39 (RPL39) pseudogene | -3.0000 | 0.4064 | |
| 63340 | ENSG00000229027 | HSFY1P1 | HSFY1 pseudogene 1 | -3.0000 | 1.0000 |
| 63339 | ENSG00000228658 | novel transcript | -3.0000 | 0.4064 | |
| 63338 | ENSG00000227684 | CROCCP4 | CROCC pseudogene 4 | -3.0000 | 0.0004 |
| 63337 | ENSG00000226928 | RPS14P4 | ribosomal protein S14 pseudogene 4 | -3.0000 | 1.0000 |
| 63336 | ENSG00000226925 | IL1R1-AS1 | IL1R1 antisense RNA 1 | -3.0000 | 0.6208 |
| 63335 | ENSG00000226757 | novel transcript, antisense to TMEM155 | -3.0000 | 1.0000 | |
| 63334 | ENSG00000225856 | PCNPP2 | PEST containing nuclear protein pseudogene 2 | -3.0000 | 0.4064 |
| 63333 | ENSG00000224944 | CASC6 | cancer susceptibility 6 | -3.0000 | 0.6208 |
| 63332 | ENSG00000224296 | MRPL49P1 | mitochondrial ribosomal protein L49 pseudogene 1 | -3.0000 | 1.0000 |
