Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM1849318
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1849318
Profile download
7180101000000000000000-755
Sequence Read Archive
SRP062328
SRP062328_M14
Human oocyte DNA methylome
Methylome
Oocyte (germinal vesicle (GV) stage )
Human
Genitalia
Bisulfite-Seq (WGBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000225591
ribosomal protein S27 (metallopanstimulin 1) (RPS27) pseudogene
4.7004
0.0000
2
ENSG00000275024
novel transcript, antisense to VWA2
4.6439
0.0000
3
ENSG00000147885
IFNA16
interferon alpha 16
4.5236
0.0000
4
ENSG00000253389
novel transcript, antisense to ANK1
4.4594
0.0000
5
ENSG00000274705
MIR486-1
microRNA 486-1
4.4594
0.0000
6
ENSG00000283450
MIR486-2
microRNA 486-2
4.4594
0.0000
7
ENSG00000201431
RNU6-1277P
RNA, U6 small nuclear 1277, pseudogene
4.4259
0.0000
8
ENSG00000235746
CTBP2P2
CTBP2 pseudogene 2
4.3923
0.0000
9
ENSG00000251221
LINC01337
long intergenic non-protein coding RNA 1337
4.3747
0.0000
10
ENSG00000228999
long intergenic non-protein coding RNA 1830
4.3219
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000251809
RN7SKP14
RN7SK pseudogene 14
-2.8074
1.0000
63127
ENSG00000251781
RNA5SP356
RNA, 5S ribosomal pseudogene 356
-2.8074
1.0000
63126
ENSG00000251644
HPRT1P1
hypoxanthine phosphoribosyltransferase 1 pseudogene 1
-2.8074
1.0000
63125
ENSG00000251569
novel protein
-2.8074
1.0000
63123
ENSG00000249577
ARP3 actin-related protein 3 homolog (yeast) pseudogene
-2.8074
1.0000
63122
ENSG00000249531
UDP glucuronosyltransferase 2 family, polypeptide B4 (UGT2B4) pseudogene
-2.8074
1.0000
63121
ENSG00000249112
novel transcript, antisense to ZNF608
-2.8074
0.6165
63120
ENSG00000248891
mago-nashi homolog B (Drosophila) (MAGOHB) pseudogene
-2.8074
1.0000
63119
ENSG00000248635
pseudogene similar to part of UDP glucuronosyltransferase 2 family protein
-2.8074
1.0000
10
ENSG00000228999
long intergenic non-protein coding RNA 1830
4.3219
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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