Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849318

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1849318 Profile download	7180101000000000000000-755	Sequence Read Archive	SRP062328	SRP062328_M14	Human oocyte DNA methylome	Methylome	Oocyte (germinal vesicle (GV) stage )	Human	Genitalia	Bisulfite-Seq (WGBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000225591		ribosomal protein S27 (metallopanstimulin 1) (RPS27) pseudogene	4.7004	0.0000
2	ENSG00000275024		novel transcript, antisense to VWA2	4.6439	0.0000
3	ENSG00000147885	IFNA16	interferon alpha 16	4.5236	0.0000
4	ENSG00000253389		novel transcript, antisense to ANK1	4.4594	0.0000
5	ENSG00000274705	MIR486-1	microRNA 486-1	4.4594	0.0000
6	ENSG00000283450	MIR486-2	microRNA 486-2	4.4594	0.0000
7	ENSG00000201431	RNU6-1277P	RNA, U6 small nuclear 1277, pseudogene	4.4259	0.0000
8	ENSG00000235746	CTBP2P2	CTBP2 pseudogene 2	4.3923	0.0000
9	ENSG00000251221	LINC01337	long intergenic non-protein coding RNA 1337	4.3747	0.0000
10	ENSG00000228999		long intergenic non-protein coding RNA 1830	4.3219	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000251809	RN7SKP14	RN7SK pseudogene 14	-2.8074	1.0000
63127	ENSG00000251781	RNA5SP356	RNA, 5S ribosomal pseudogene 356	-2.8074	1.0000
63126	ENSG00000251644	HPRT1P1	hypoxanthine phosphoribosyltransferase 1 pseudogene 1	-2.8074	1.0000
63125	ENSG00000251569		novel protein	-2.8074	1.0000
63123	ENSG00000249577		ARP3 actin-related protein 3 homolog (yeast) pseudogene	-2.8074	1.0000
63122	ENSG00000249531		UDP glucuronosyltransferase 2 family, polypeptide B4 (UGT2B4) pseudogene	-2.8074	1.0000
63121	ENSG00000249112		novel transcript, antisense to ZNF608	-2.8074	0.6165
63120	ENSG00000248891		mago-nashi homolog B (Drosophila) (MAGOHB) pseudogene	-2.8074	1.0000
63119	ENSG00000248635		pseudogene similar to part of UDP glucuronosyltransferase 2 family protein	-2.8074	1.0000
10	ENSG00000228999		long intergenic non-protein coding RNA 1830	4.3219	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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