Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849318

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849318


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7180101000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M14Human oocyte DNA methylomeMethylomeOocyte (germinal vesicle (GV) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000225591 ribosomal protein S27 (metallopanstimulin 1) (RPS27) pseudogene 4.7004 0.0000
2 ENSG00000275024 novel transcript, antisense to VWA2 4.6439 0.0000
3 ENSG00000147885 IFNA16 interferon alpha 16 4.5236 0.0000
4 ENSG00000253389 novel transcript, antisense to ANK1 4.4594 0.0000
5 ENSG00000274705 MIR486-1 microRNA 486-1 4.4594 0.0000
6 ENSG00000283450 MIR486-2 microRNA 486-2 4.4594 0.0000
7 ENSG00000201431 RNU6-1277P RNA, U6 small nuclear 1277, pseudogene 4.4259 0.0000
8 ENSG00000235746 CTBP2P2 CTBP2 pseudogene 2 4.3923 0.0000
9 ENSG00000251221 LINC01337 long intergenic non-protein coding RNA 1337 4.3747 0.0000
10 ENSG00000228999 long intergenic non-protein coding RNA 1830 4.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000251809 RN7SKP14 RN7SK pseudogene 14 -2.8074 1.0000
63127 ENSG00000251781 RNA5SP356 RNA, 5S ribosomal pseudogene 356 -2.8074 1.0000
63126 ENSG00000251644 HPRT1P1 hypoxanthine phosphoribosyltransferase 1 pseudogene 1 -2.8074 1.0000
63125 ENSG00000251569 novel protein -2.8074 1.0000
63123 ENSG00000249577 ARP3 actin-related protein 3 homolog (yeast) pseudogene -2.8074 1.0000
63122 ENSG00000249531 UDP glucuronosyltransferase 2 family, polypeptide B4 (UGT2B4) pseudogene -2.8074 1.0000
63121 ENSG00000249112 novel transcript, antisense to ZNF608 -2.8074 0.6165
63120 ENSG00000248891 mago-nashi homolog B (Drosophila) (MAGOHB) pseudogene -2.8074 1.0000
63119 ENSG00000248635 pseudogene similar to part of UDP glucuronosyltransferase 2 family protein -2.8074 1.0000
10 ENSG00000228999 long intergenic non-protein coding RNA 1830 4.3219 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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