SHOGoiN Cell Methylome: GSM1849319
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1849319 Profile download | 7180101000000000000000-755 | Sequence Read Archive | SRP062328 | SRP062328_M15 | Human oocyte DNA methylome | Methylome | Oocyte (germinal vesicle (GV) stage ) | Human | Genitalia | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000243338 | RN7SL307P | RNA, 7SL, cytoplasmic 307, pseudogene | 6.0000 | 0.0000 |
| 2 | ENSG00000235123 | DSCAM-AS1 | DSCAM antisense RNA 1 | 5.9307 | 0.0000 |
| 3 | ENSG00000277687 | novel transcript, sense intronic to CACUL1 | 5.7814 | 0.0000 | |
| 4 | ENSG00000250020 | Spi-C transcription factor (Spi-1/PU.1 related) (SPIC) pseudogene | 5.6293 | 0.0000 | |
| 5 | ENSG00000168288 | MMADHC | metabolism of cobalamin associated D | 5.6147 | 0.0000 |
| 6 | ENSG00000212257 | RNU6-1176P | RNA, U6 small nuclear 1176, pseudogene | 5.6147 | 0.0000 |
| 7 | ENSG00000231969 | novel protein (LOC642340) | 5.6147 | 0.0000 | |
| 8 | ENSG00000237011 | novel transcript | 5.6147 | 0.0000 | |
| 9 | ENSG00000249019 | ribosomal protein S7 (RPS7) pseudogene | 5.5850 | 0.0000 | |
| 10 | ENSG00000222436 | RN7SKP278 | RN7SK pseudogene 278 | 5.5546 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000186124 | OR9M1P | olfactory receptor family 9 subfamily M member 1, pseudogene | -3.3362 | 0.0617 |
| 63340 | ENSG00000264058 | novel transcript | -3.3357 | 0.0107 | |
| 63339 | ENSG00000213424 | KRT222 | keratin 222 | -3.3357 | 0.0107 |
| 63338 | ENSG00000236544 | novel transcript | -3.3348 | 0.0000 | |
| 63337 | ENSG00000275846 | novel transcript | -3.3332 | 0.0000 | |
| 63336 | ENSG00000233028 | ribonuclease T2 (RNASET2) pseudogene | -3.3325 | 0.0000 | |
| 63335 | ENSG00000251569 | novel protein | -3.3322 | 0.0029 | |
| 63334 | ENSG00000278577 | zinc finger protein 679 (ZNF679) pseudogene | -3.3286 | 0.0533 | |
| 63333 | ENSG00000204194 | RPL12P1 | ribosomal protein L12 pseudogene 1 | -3.3266 | 0.0000 |
| 63332 | ENSG00000205822 | TPTE2P6 | transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 6 | -3.3264 | 0.0114 |
