Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849319

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849319


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7180101000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M15Human oocyte DNA methylomeMethylomeOocyte (germinal vesicle (GV) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000243338 RN7SL307P RNA, 7SL, cytoplasmic 307, pseudogene 6.0000 0.0000
2 ENSG00000235123 DSCAM-AS1 DSCAM antisense RNA 1 5.9307 0.0000
3 ENSG00000277687 novel transcript, sense intronic to CACUL1 5.7814 0.0000
4 ENSG00000250020 Spi-C transcription factor (Spi-1/PU.1 related) (SPIC) pseudogene 5.6293 0.0000
5 ENSG00000168288 MMADHC metabolism of cobalamin associated D 5.6147 0.0000
6 ENSG00000212257 RNU6-1176P RNA, U6 small nuclear 1176, pseudogene 5.6147 0.0000
7 ENSG00000231969 MMADHC-DT MMADHC divergent transcript 5.6147 0.0000
8 ENSG00000237011 novel transcript 5.6147 0.0000
9 ENSG00000249019 ribosomal protein S7 (RPS7) pseudogene 5.5850 0.0000
10 ENSG00000222436 RN7SKP278 RN7SK pseudogene 278 5.5546 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000225836 novel transcript -3.1675 0.3903
63127 ENSG00000262521 novel transcript -3.1664 0.0000
63126 ENSG00000254056 IGHV3-71 immunoglobulin heavy variable 3-71 (pseudogene) -3.1656 0.0000
63125 ENSG00000226488 LINC01824 long intergenic non-protein coding RNA 1824 -3.1653 0.0002
63124 ENSG00000259470 KRT8P9 keratin 8 pseudogene 9 -3.1634 0.0000
63123 ENSG00000259663 novel transcript, antisense to ISL1 -3.1633 0.1189
63122 ENSG00000189120 SP6 Sp6 transcription factor -3.1620 0.0000
63121 ENSG00000221995 TIAF1 TGFB1-induced anti-apoptotic factor 1 -3.1610 0.0002
63120 ENSG00000215833 QRSL1P1 QRSL1 pseudogene 1 -3.1610 0.1514
63119 ENSG00000229405 proteasome (prosome, macropain) subunit, beta type, 1 (PSMB1) pseudogene -3.1557 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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