SHOGoiN Cell Methylome: GSM1849319

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849319


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7180101000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M15Human oocyte DNA methylomeMethylomeOocyte (germinal vesicle (GV) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000243338 RN7SL307P RNA, 7SL, cytoplasmic 307, pseudogene 6.0000 0.0000
2 ENSG00000235123 DSCAM-AS1 DSCAM antisense RNA 1 5.9307 0.0000
3 ENSG00000277687 novel transcript, sense intronic to CACUL1 5.7814 0.0000
4 ENSG00000250020 Spi-C transcription factor (Spi-1/PU.1 related) (SPIC) pseudogene 5.6293 0.0000
5 ENSG00000168288 MMADHC metabolism of cobalamin associated D 5.6147 0.0000
6 ENSG00000212257 RNU6-1176P RNA, U6 small nuclear 1176, pseudogene 5.6147 0.0000
7 ENSG00000231969 novel protein (LOC642340) 5.6147 0.0000
8 ENSG00000237011 novel transcript 5.6147 0.0000
9 ENSG00000249019 ribosomal protein S7 (RPS7) pseudogene 5.5850 0.0000
10 ENSG00000222436 RN7SKP278 RN7SK pseudogene 278 5.5546 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000186124 OR9M1P olfactory receptor family 9 subfamily M member 1, pseudogene -3.3362 0.0617
63340 ENSG00000264058 novel transcript -3.3357 0.0107
63339 ENSG00000213424 KRT222 keratin 222 -3.3357 0.0107
63338 ENSG00000236544 novel transcript -3.3348 0.0000
63337 ENSG00000275846 novel transcript -3.3332 0.0000
63336 ENSG00000233028 ribonuclease T2 (RNASET2) pseudogene -3.3325 0.0000
63335 ENSG00000251569 novel protein -3.3322 0.0029
63334 ENSG00000278577 zinc finger protein 679 (ZNF679) pseudogene -3.3286 0.0533
63333 ENSG00000204194 RPL12P1 ribosomal protein L12 pseudogene 1 -3.3266 0.0000
63332 ENSG00000205822 TPTE2P6 transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 6 -3.3264 0.0114

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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