Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM1849319
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1849319
Profile download
7180101000000000000000-755
Sequence Read Archive
SRP062328
SRP062328_M15
Human oocyte DNA methylome
Methylome
Oocyte (germinal vesicle (GV) stage )
Human
Genitalia
Bisulfite-Seq (WGBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000243338
RN7SL307P
RNA, 7SL, cytoplasmic 307, pseudogene
6.0000
0.0000
2
ENSG00000235123
DSCAM-AS1
DSCAM antisense RNA 1
5.9307
0.0000
3
ENSG00000277687
novel transcript, sense intronic to CACUL1
5.7814
0.0000
4
ENSG00000250020
Spi-C transcription factor (Spi-1/PU.1 related) (SPIC) pseudogene
5.6293
0.0000
5
ENSG00000168288
MMADHC
metabolism of cobalamin associated D
5.6147
0.0000
6
ENSG00000212257
RNU6-1176P
RNA, U6 small nuclear 1176, pseudogene
5.6147
0.0000
7
ENSG00000231969
MMADHC-DT
MMADHC divergent transcript
5.6147
0.0000
8
ENSG00000237011
novel transcript
5.6147
0.0000
9
ENSG00000249019
ribosomal protein S7 (RPS7) pseudogene
5.5850
0.0000
10
ENSG00000222436
RN7SKP278
RN7SK pseudogene 278
5.5546
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000225836
novel transcript
-3.1675
0.3903
63127
ENSG00000262521
novel transcript
-3.1664
0.0000
63126
ENSG00000254056
IGHV3-71
immunoglobulin heavy variable 3-71 (pseudogene)
-3.1656
0.0000
63125
ENSG00000226488
LINC01824
long intergenic non-protein coding RNA 1824
-3.1653
0.0002
63124
ENSG00000259470
KRT8P9
keratin 8 pseudogene 9
-3.1634
0.0000
63123
ENSG00000259663
novel transcript, antisense to ISL1
-3.1633
0.1189
63122
ENSG00000189120
SP6
Sp6 transcription factor
-3.1620
0.0000
63121
ENSG00000221995
TIAF1
TGFB1-induced anti-apoptotic factor 1
-3.1610
0.0002
63120
ENSG00000215833
QRSL1P1
QRSL1 pseudogene 1
-3.1610
0.1514
63119
ENSG00000229405
proteasome (prosome, macropain) subunit, beta type, 1 (PSMB1) pseudogene
-3.1557
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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