Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849319

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1849319 Profile download	7180101000000000000000-755	Sequence Read Archive	SRP062328	SRP062328_M15	Human oocyte DNA methylome	Methylome	Oocyte (germinal vesicle (GV) stage )	Human	Genitalia	Bisulfite-Seq (WGBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000243338	RN7SL307P	RNA, 7SL, cytoplasmic 307, pseudogene	6.0000	0.0000
2	ENSG00000235123	DSCAM-AS1	DSCAM antisense RNA 1	5.9307	0.0000
3	ENSG00000277687		novel transcript, sense intronic to CACUL1	5.7814	0.0000
4	ENSG00000250020		Spi-C transcription factor (Spi-1/PU.1 related) (SPIC) pseudogene	5.6293	0.0000
5	ENSG00000168288	MMADHC	metabolism of cobalamin associated D	5.6147	0.0000
6	ENSG00000212257	RNU6-1176P	RNA, U6 small nuclear 1176, pseudogene	5.6147	0.0000
7	ENSG00000231969	MMADHC-DT	MMADHC divergent transcript	5.6147	0.0000
8	ENSG00000237011		novel transcript	5.6147	0.0000
9	ENSG00000249019		ribosomal protein S7 (RPS7) pseudogene	5.5850	0.0000
10	ENSG00000222436	RN7SKP278	RN7SK pseudogene 278	5.5546	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000225836		novel transcript	-3.1675	0.3903
63127	ENSG00000262521		novel transcript	-3.1664	0.0000
63126	ENSG00000254056	IGHV3-71	immunoglobulin heavy variable 3-71 (pseudogene)	-3.1656	0.0000
63125	ENSG00000226488	LINC01824	long intergenic non-protein coding RNA 1824	-3.1653	0.0002
63124	ENSG00000259470	KRT8P9	keratin 8 pseudogene 9	-3.1634	0.0000
63123	ENSG00000259663		novel transcript, antisense to ISL1	-3.1633	0.1189
63122	ENSG00000189120	SP6	Sp6 transcription factor	-3.1620	0.0000
63121	ENSG00000221995	TIAF1	TGFB1-induced anti-apoptotic factor 1	-3.1610	0.0002
63120	ENSG00000215833	QRSL1P1	QRSL1 pseudogene 1	-3.1610	0.1514
63119	ENSG00000229405		proteasome (prosome, macropain) subunit, beta type, 1 (PSMB1) pseudogene	-3.1557	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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