Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849320

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849320


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7180101000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M16Human oocyte DNA methylomeMethylomeOocyte (germinal vesicle (GV) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000229415 SFTA3 surfactant associated 3 7.2384 0.0000
2 ENSG00000102189 EEA1 early endosome antigen 1 7.2095 0.0000
3 ENSG00000221944 TIGD1 tigger transposable element derived 1 7.1799 0.0000
4 ENSG00000284407 MIR5001 microRNA 5001 7.1799 0.0000
5 ENSG00000259152 novel transcript, intronic to GABRG3 7.1085 0.0000
6 ENSG00000214374 RPLP2P1 ribosomal protein lateral stalk subunit P2 pseudogene 1 7.0875 0.0000
7 ENSG00000235811 ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e (ATP6V0E) pseudogene 7.0768 0.0000
8 ENSG00000238444 RNU6-893P RNA, U6 small nuclear 893, pseudogene 7.0553 0.0000
9 ENSG00000271025 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2, pseudogene 7.0553 0.0000
10 ENSG00000197045 GMFB glia maturation factor beta 7.0444 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000128283 CDC42EP1 CDC42 effector protein 1 -5.2838 0.0000
63127 ENSG00000260919 novel transcript, antisense to CLK3 -5.2817 0.0000
63126 ENSG00000271606 TBC1 domain family, member 3 (TBC1D3) pseudogene -5.2793 0.0000
63125 ENSG00000232606 LINC01412 long intergenic non-protein coding RNA 1412 -5.2779 0.0000
63124 ENSG00000274211 SOCS7 suppressor of cytokine signaling 7 -5.2681 0.0070
63123 ENSG00000228525 pseudogene similar to part of NADH dehydrogenase subunit 6 (ND6) -5.2667 0.0098
63122 ENSG00000207923 MIR559 microRNA 559 -5.2539 0.0000
63121 ENSG00000261094 novel transcript -5.2513 0.0000
63120 ENSG00000283227 SPRR5 small proline rich protein 5 -5.2479 0.0096
10 ENSG00000197045 GMFB glia maturation factor beta 7.0444 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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