SHOGoiN Cell Methylome: GSM1849320

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849320


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7180101000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M16Human oocyte DNA methylomeMethylomeOocyte (germinal vesicle (GV) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000229415 SFTA3 surfactant associated 3 7.2384 0.0000
2 ENSG00000102189 EEA1 early endosome antigen 1 7.2095 0.0000
3 ENSG00000221944 TIGD1 tigger transposable element derived 1 7.1799 0.0000
4 ENSG00000284407 MIR5001 microRNA 5001 7.1799 0.0000
5 ENSG00000259152 novel transcript, intronic to GABRG3 7.1085 0.0000
6 ENSG00000214374 RPLP2P1 ribosomal protein lateral stalk subunit P2 pseudogene 1 7.0875 0.0000
7 ENSG00000235811 ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e (ATP6V0E) pseudogene 7.0768 0.0000
8 ENSG00000238444 RNU6-893P RNA, U6 small nuclear 893, pseudogene 7.0553 0.0000
9 ENSG00000271025 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2, pseudogene 7.0553 0.0000
10 ENSG00000197045 GMFB glia maturation factor beta 7.0444 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000108242 CYP2C18 cytochrome P450 family 2 subfamily C member 18 -5.4919 0.0730
63340 ENSG00000233832 N-acetylated alpha-linked acidic dipeptidase 2 (NAALAD2) pseudogene -5.4915 0.0046
63339 ENSG00000225612 novel transcript -5.4756 0.0044
63338 ENSG00000235151 novel transcript -5.4743 0.0000
63337 ENSG00000249568 novel transcript -5.4711 0.0000
63336 ENSG00000231072 GAPDHP64 glyceraldehyde-3-phosphate dehydrogenase pseudogene 64 -5.4711 0.0000
63335 ENSG00000185477 GPRIN3 GPRIN family member 3 -5.4702 0.0000
63334 ENSG00000239595 RN7SL79P RNA, 7SL, cytoplasmic 79, pseudogene -5.4700 0.0002
63333 ENSG00000276998 REXO1L2P REXO1 like 2, pseudogene -5.4641 0.0000
63332 ENSG00000103018 CYB5B cytochrome b5 type B -5.4623 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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