SHOGoiN Cell Methylome: GSM1849321

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849321


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5030203000000000000000-761Sequence Read ArchiveSRP062328SRP062328_M17Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MII) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000183161 FANCF FA complementation group F 5.2479 0.0000
2 ENSG00000228446 ankyrin repeat domain 49 (ANKRD49) pseudogene 5.2479 0.0000
3 ENSG00000220804 LINC01881 long intergenic non-protein coding RNA 1881 5.1699 0.0000
4 ENSG00000224160 CICP10 capicua transcriptional repressor pseudogene 10 5.1699 0.0000
5 ENSG00000244528 SEPT14P2 septin 14 pseudogene 2 5.1699 0.0000
6 ENSG00000234515 PPP1R2P1 protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 1 5.1333 0.0000
7 ENSG00000163961 RNF168 ring finger protein 168 5.0330 0.0000
8 ENSG00000251350 LINC02475 long intergenic non-protein coding RNA 2475 5.0000 0.0000
9 ENSG00000229679 novel transcript 4.9843 0.0000
10 ENSG00000116014 KISS1R KISS1 receptor 4.9069 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000230214 FTLP18 ferritin light chain pseudogene 18 -3.7004 1.0000
63340 ENSG00000229663 DPY19L4P1 DPY19L4 pseudogene 1 -3.7004 1.0000
63339 ENSG00000228948 SLC25A6P5 solute carrier family 25 member 6 pseudogene 5 -3.7004 1.0000
63338 ENSG00000228232 GAPDHP1 glyceraldehyde-3-phosphate dehydrogenase pseudogene 1 -3.7004 1.0000
63337 ENSG00000227101 novel transcript -3.7004 0.2653
63336 ENSG00000226592 cytoskeleton-associated protein 4 (CKAP4) pseudogene -3.7004 1.0000
63335 ENSG00000225508 SSXP5 SSX family pseudogene 5 -3.7004 0.6418
63334 ENSG00000225383 SFTA1P surfactant associated 1, pseudogene -3.7004 1.0000
63333 ENSG00000224948 ATP5MC1P8 ATP synthase membrane subunit c locus 1 pseudogene 8 -3.7004 1.0000
63332 ENSG00000224516 novel transcript -3.7004 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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