Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM1849321
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1849321
Profile download
5030203000000000000000-761
Sequence Read Archive
SRP062328
SRP062328_M17
Human oocyte DNA methylome
Methylome
Oocyte (mature metaphase (MII) stage )
Human
Genitalia
Bisulfite-Seq (WGBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000183161
FANCF
FA complementation group F
5.2479
0.0000
2
ENSG00000228446
ANKRD49P1
ANKRD49 pseudogene 1
5.2479
0.0000
3
ENSG00000220804
LINC01881
long intergenic non-protein coding RNA 1881
5.1699
0.0000
4
ENSG00000224160
CICP10
capicua transcriptional repressor pseudogene 10
5.1699
0.0000
5
ENSG00000244528
SEPTIN14P2
septin 14 pseudogene 2
5.1699
0.0000
6
ENSG00000234515
PPP1R2P1
protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 1
5.1333
0.0000
7
ENSG00000163961
RNF168
ring finger protein 168
5.0330
0.0000
8
ENSG00000251350
LINC02475
long intergenic non-protein coding RNA 2475
5.0000
0.0000
9
ENSG00000229679
novel transcript
4.9843
0.0000
10
ENSG00000116014
KISS1R
KISS1 receptor
4.9069
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000237605
DYRK3-AS1
DYRK3 antisense RNA 1
-3.4882
0.1186
63127
ENSG00000143479
DYRK3
dual specificity tyrosine phosphorylation regulated kinase 3
-3.4882
0.1186
63126
ENSG00000205784
ARRDC5
arrestin domain containing 5
-3.4856
0.0224
63125
ENSG00000260963
novel transcript
-3.4853
0.1714
63124
ENSG00000260393
novel transcript
-3.4853
0.1714
63123
ENSG00000260997
novel transcript, overlapping MYO1G
-3.4845
0.0222
63122
ENSG00000270640
novel transcript, sense intronic to FOSL2
-3.4784
0.0224
63121
ENSG00000075426
FOSL2
FOS like 2, AP-1 transcription factor subunit
-3.4784
0.0224
63120
ENSG00000252178
RNU7-69P
RNA, U7 small nuclear 69 pseudogene
-3.4773
0.2620
63119
ENSG00000201549
Y RNA
-3.4720
0.0763
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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