SHOGoiN Cell Methylome: GSM1849321
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1849321 Profile download | 5030203000000000000000-761 | Sequence Read Archive | SRP062328 | SRP062328_M17 | Human oocyte DNA methylome | Methylome | Oocyte (mature metaphase (MII) stage ) | Human | Genitalia | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000183161 | FANCF | FA complementation group F | 5.2479 | 0.0000 |
| 2 | ENSG00000228446 | ankyrin repeat domain 49 (ANKRD49) pseudogene | 5.2479 | 0.0000 | |
| 3 | ENSG00000220804 | LINC01881 | long intergenic non-protein coding RNA 1881 | 5.1699 | 0.0000 |
| 4 | ENSG00000224160 | CICP10 | capicua transcriptional repressor pseudogene 10 | 5.1699 | 0.0000 |
| 5 | ENSG00000244528 | SEPT14P2 | septin 14 pseudogene 2 | 5.1699 | 0.0000 |
| 6 | ENSG00000234515 | PPP1R2P1 | protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 1 | 5.1333 | 0.0000 |
| 7 | ENSG00000163961 | RNF168 | ring finger protein 168 | 5.0330 | 0.0000 |
| 8 | ENSG00000251350 | LINC02475 | long intergenic non-protein coding RNA 2475 | 5.0000 | 0.0000 |
| 9 | ENSG00000229679 | novel transcript | 4.9843 | 0.0000 | |
| 10 | ENSG00000116014 | KISS1R | KISS1 receptor | 4.9069 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000230214 | FTLP18 | ferritin light chain pseudogene 18 | -3.7004 | 1.0000 |
| 63340 | ENSG00000229663 | DPY19L4P1 | DPY19L4 pseudogene 1 | -3.7004 | 1.0000 |
| 63339 | ENSG00000228948 | SLC25A6P5 | solute carrier family 25 member 6 pseudogene 5 | -3.7004 | 1.0000 |
| 63338 | ENSG00000228232 | GAPDHP1 | glyceraldehyde-3-phosphate dehydrogenase pseudogene 1 | -3.7004 | 1.0000 |
| 63337 | ENSG00000227101 | novel transcript | -3.7004 | 0.2653 | |
| 63336 | ENSG00000226592 | cytoskeleton-associated protein 4 (CKAP4) pseudogene | -3.7004 | 1.0000 | |
| 63335 | ENSG00000225508 | SSXP5 | SSX family pseudogene 5 | -3.7004 | 0.6418 |
| 63334 | ENSG00000225383 | SFTA1P | surfactant associated 1, pseudogene | -3.7004 | 1.0000 |
| 63333 | ENSG00000224948 | ATP5MC1P8 | ATP synthase membrane subunit c locus 1 pseudogene 8 | -3.7004 | 1.0000 |
| 63332 | ENSG00000224516 | novel transcript | -3.7004 | 1.0000 |
