Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849321

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849321


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5030203000000000000000-761Sequence Read ArchiveSRP062328SRP062328_M17Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MII) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000183161 FANCF FA complementation group F 5.2479 0.0000
2 ENSG00000228446 ANKRD49P1 ANKRD49 pseudogene 1 5.2479 0.0000
3 ENSG00000220804 LINC01881 long intergenic non-protein coding RNA 1881 5.1699 0.0000
4 ENSG00000224160 CICP10 capicua transcriptional repressor pseudogene 10 5.1699 0.0000
5 ENSG00000244528 SEPTIN14P2 septin 14 pseudogene 2 5.1699 0.0000
6 ENSG00000234515 PPP1R2P1 protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 1 5.1333 0.0000
7 ENSG00000163961 RNF168 ring finger protein 168 5.0330 0.0000
8 ENSG00000251350 LINC02475 long intergenic non-protein coding RNA 2475 5.0000 0.0000
9 ENSG00000229679 novel transcript 4.9843 0.0000
10 ENSG00000116014 KISS1R KISS1 receptor 4.9069 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000237605 DYRK3-AS1 DYRK3 antisense RNA 1 -3.4882 0.1186
63127 ENSG00000143479 DYRK3 dual specificity tyrosine phosphorylation regulated kinase 3 -3.4882 0.1186
63126 ENSG00000205784 ARRDC5 arrestin domain containing 5 -3.4856 0.0224
63125 ENSG00000260963 novel transcript -3.4853 0.1714
63124 ENSG00000260393 novel transcript -3.4853 0.1714
63123 ENSG00000260997 novel transcript, overlapping MYO1G -3.4845 0.0222
63122 ENSG00000270640 novel transcript, sense intronic to FOSL2 -3.4784 0.0224
63121 ENSG00000075426 FOSL2 FOS like 2, AP-1 transcription factor subunit -3.4784 0.0224
63120 ENSG00000252178 RNU7-69P RNA, U7 small nuclear 69 pseudogene -3.4773 0.2620
63119 ENSG00000201549 Y RNA -3.4720 0.0763

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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