SHOGoiN Cell Methylome: GSM1849322
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1849322 Profile download | 5030203000000000000000-761 | Sequence Read Archive | SRP062328 | SRP062328_M18 | Human oocyte DNA methylome | Methylome | Oocyte (mature metaphase (MII) stage ) | Human | Genitalia | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000140450 | ARRDC4 | arrestin domain containing 4 | 5.5546 | 0.0000 |
| 2 | ENSG00000254273 | chromatin accessibility complex protein 1 (CHRAC1) pseudogene | 5.3923 | 0.0000 | |
| 3 | ENSG00000267013 | LINC01929 | long intergenic non-protein coding RNA 1929 | 5.3923 | 0.0000 |
| 4 | ENSG00000135315 | CEP162 | centrosomal protein 162 | 5.3576 | 0.0000 |
| 5 | ENSG00000184995 | IFNE | interferon epsilon | 5.3219 | 0.0000 |
| 6 | ENSG00000210841 | RNU6ATAC26P | RNA, U6atac small nuclear 26, pseudogene | 5.3219 | 0.0000 |
| 7 | ENSG00000237927 | novel transcript | 5.2849 | 0.0000 | |
| 8 | ENSG00000240997 | RN7SL183P | RNA, 7SL, cytoplasmic 183, pseudogene | 5.2277 | 0.0000 |
| 9 | ENSG00000134538 | SLCO1B1 | solute carrier organic anion transporter family member 1B1 | 5.1699 | 0.0000 |
| 10 | ENSG00000232719 | novel transcript | 5.1699 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000207818 | MIR105-2 | microRNA 105-2 | -3.5850 | 1.0000 |
| 63340 | ENSG00000207187 | SNORA10B | small nucleolar RNA, H/ACA box 10B | -3.5850 | 1.0000 |
| 63339 | ENSG00000207148 | NA | -3.5850 | 1.0000 | |
| 63338 | ENSG00000207135 | RNU6-452P | RNA, U6 small nuclear 452, pseudogene | -3.5850 | 0.4008 |
| 63337 | ENSG00000206931 | RNU6-1042P | RNA, U6 small nuclear 1042, pseudogene | -3.5850 | 0.0736 |
| 63336 | ENSG00000201443 | RNU6-309P | RNA, U6 small nuclear 309, pseudogene | -3.5850 | 1.0000 |
| 63335 | ENSG00000197428 | OR51D1 | olfactory receptor family 51 subfamily D member 1 | -3.5850 | 1.0000 |
| 63334 | ENSG00000197249 | SERPINA1 | serpin family A member 1 | -3.5850 | 0.4008 |
| 63333 | ENSG00000196228 | SULT1C3 | sulfotransferase family 1C member 3 | -3.5850 | 1.0000 |
| 63332 | ENSG00000180785 | OR51E1 | olfactory receptor family 51 subfamily E member 1 | -3.5850 | 1.0000 |
