Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849322

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849322


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5030203000000000000000-761Sequence Read ArchiveSRP062328SRP062328_M18Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MII) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000140450 ARRDC4 arrestin domain containing 4 5.5546 0.0000
2 ENSG00000254273 chromatin accessibility complex protein 1 (CHRAC1) pseudogene 5.3923 0.0000
3 ENSG00000267013 LINC01929 long intergenic non-protein coding RNA 1929 5.3923 0.0000
4 ENSG00000135315 CEP162 centrosomal protein 162 5.3576 0.0000
5 ENSG00000184995 IFNE interferon epsilon 5.3219 0.0000
6 ENSG00000210841 RNU6ATAC26P RNA, U6atac small nuclear 26, pseudogene 5.3219 0.0000
7 ENSG00000237927 novel transcript 5.2849 0.0000
8 ENSG00000240997 RN7SL183P RNA, 7SL, cytoplasmic 183, pseudogene 5.2277 0.0000
9 ENSG00000134538 SLCO1B1 solute carrier organic anion transporter family member 1B1 5.1699 0.0000
10 ENSG00000232719 novel transcript 5.1699 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63221 ENSG00000212939 novel transcript -3.4594 1.0000
63220 ENSG00000207989 MIR493 microRNA 493 -3.4594 1.0000
63219 ENSG00000206805 NA -3.4594 1.0000
63218 ENSG00000204363 SPANXN5 SPANX family member N5 -3.4594 0.3952
63217 ENSG00000197641 SERPINB13 serpin family B member 13 -3.4594 1.0000
63216 ENSG00000186615 KTN1-AS1 KTN1 antisense RNA 1 -3.4594 0.0030
63215 ENSG00000182783 OR2T29 olfactory receptor family 2 subfamily T member 29 -3.4594 1.0000
63214 ENSG00000182645 CCDC172 coiled-coil domain containing 172 -3.4594 1.0000
63213 ENSG00000179133 C10orf67 chromosome 10 open reading frame 67 -3.4594 0.1145
63212 ENSG00000176007 FAM220BP family with sequence similarity 220 member B, pseudogene -3.4594 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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