Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849322

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1849322 Profile download	5030203000000000000000-761	Sequence Read Archive	SRP062328	SRP062328_M18	Human oocyte DNA methylome	Methylome	Oocyte (mature metaphase (MII) stage )	Human	Genitalia	Bisulfite-Seq (WGBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000140450	ARRDC4	arrestin domain containing 4	5.5546	0.0000
2	ENSG00000254273		chromatin accessibility complex protein 1 (CHRAC1) pseudogene	5.3923	0.0000
3	ENSG00000267013	LINC01929	long intergenic non-protein coding RNA 1929	5.3923	0.0000
4	ENSG00000135315	CEP162	centrosomal protein 162	5.3576	0.0000
5	ENSG00000184995	IFNE	interferon epsilon	5.3219	0.0000
6	ENSG00000210841	RNU6ATAC26P	RNA, U6atac small nuclear 26, pseudogene	5.3219	0.0000
7	ENSG00000237927		novel transcript	5.2849	0.0000
8	ENSG00000240997	RN7SL183P	RNA, 7SL, cytoplasmic 183, pseudogene	5.2277	0.0000
9	ENSG00000134538	SLCO1B1	solute carrier organic anion transporter family member 1B1	5.1699	0.0000
10	ENSG00000232719		novel transcript	5.1699	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63221	ENSG00000212939		novel transcript	-3.4594	1.0000
63220	ENSG00000207989	MIR493	microRNA 493	-3.4594	1.0000
63219	ENSG00000206805		NA	-3.4594	1.0000
63218	ENSG00000204363	SPANXN5	SPANX family member N5	-3.4594	0.3952
63217	ENSG00000197641	SERPINB13	serpin family B member 13	-3.4594	1.0000
63216	ENSG00000186615	KTN1-AS1	KTN1 antisense RNA 1	-3.4594	0.0030
63215	ENSG00000182783	OR2T29	olfactory receptor family 2 subfamily T member 29	-3.4594	1.0000
63214	ENSG00000182645	CCDC172	coiled-coil domain containing 172	-3.4594	1.0000
63213	ENSG00000179133	C10orf67	chromosome 10 open reading frame 67	-3.4594	0.1145
63212	ENSG00000176007	FAM220BP	family with sequence similarity 220 member B, pseudogene	-3.4594	1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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