Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849322

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849322


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5030203000000000000000-761Sequence Read ArchiveSRP062328SRP062328_M18Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MII) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000140450 ARRDC4 arrestin domain containing 4 5.5546 0.0000
2 ENSG00000254273 chromatin accessibility complex protein 1 (CHRAC1) pseudogene 5.3923 0.0000
3 ENSG00000267013 LINC01929 long intergenic non-protein coding RNA 1929 5.3923 0.0000
4 ENSG00000135315 CEP162 centrosomal protein 162 5.3576 0.0000
5 ENSG00000184995 IFNE interferon epsilon 5.3219 0.0000
6 ENSG00000210841 RNU6ATAC26P RNA, U6atac small nuclear 26, pseudogene 5.3219 0.0000
7 ENSG00000237927 novel transcript 5.2849 0.0000
8 ENSG00000240997 RN7SL183P RNA, 7SL, cytoplasmic 183, pseudogene 5.2277 0.0000
9 ENSG00000134538 SLCO1B1 solute carrier organic anion transporter family member 1B1 5.1699 0.0000
10 ENSG00000232719 novel transcript 5.1699 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000187855 ASCL4 achaete-scute family bHLH transcription factor 4 -3.4247 0.0029
63172 ENSG00000233365 novel transcript -3.4245 0.0320
63171 ENSG00000112218 GPR63 G protein-coupled receptor 63 -3.4242 0.0437
63170 ENSG00000203985 LDLRAD1 low density lipoprotein receptor class A domain containing 1 -3.4221 0.1123
63169 ENSG00000123080 CDKN2C cyclin dependent kinase inhibitor 2C -3.4203 0.0000
63168 ENSG00000267388 novel transcript -3.4200 0.0025
63167 ENSG00000279933 TEC -3.4191 0.0143
63166 ENSG00000248890 HHIP-AS1 HHIP antisense RNA 1 -3.4175 0.1298
63165 ENSG00000211706 TRBV6-1 T cell receptor beta variable 6-1 -3.4154 0.0725
63164 ENSG00000108511 HOXB6 homeobox B6 -3.4136 0.2659

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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