Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM1849322
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1849322
Profile download
5030203000000000000000-761
Sequence Read Archive
SRP062328
SRP062328_M18
Human oocyte DNA methylome
Methylome
Oocyte (mature metaphase (MII) stage )
Human
Genitalia
Bisulfite-Seq (WGBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000140450
ARRDC4
arrestin domain containing 4
5.5546
0.0000
2
ENSG00000254273
chromatin accessibility complex protein 1 (CHRAC1) pseudogene
5.3923
0.0000
3
ENSG00000267013
LINC01929
long intergenic non-protein coding RNA 1929
5.3923
0.0000
4
ENSG00000135315
CEP162
centrosomal protein 162
5.3576
0.0000
5
ENSG00000184995
IFNE
interferon epsilon
5.3219
0.0000
6
ENSG00000210841
RNU6ATAC26P
RNA, U6atac small nuclear 26, pseudogene
5.3219
0.0000
7
ENSG00000237927
novel transcript
5.2849
0.0000
8
ENSG00000240997
RN7SL183P
RNA, 7SL, cytoplasmic 183, pseudogene
5.2277
0.0000
9
ENSG00000134538
SLCO1B1
solute carrier organic anion transporter family member 1B1
5.1699
0.0000
10
ENSG00000232719
novel transcript
5.1699
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63173
ENSG00000187855
ASCL4
achaete-scute family bHLH transcription factor 4
-3.4247
0.0029
63172
ENSG00000233365
novel transcript
-3.4245
0.0320
63171
ENSG00000112218
GPR63
G protein-coupled receptor 63
-3.4242
0.0437
63170
ENSG00000203985
LDLRAD1
low density lipoprotein receptor class A domain containing 1
-3.4221
0.1123
63169
ENSG00000123080
CDKN2C
cyclin dependent kinase inhibitor 2C
-3.4203
0.0000
63168
ENSG00000267388
novel transcript
-3.4200
0.0025
63167
ENSG00000279933
TEC
-3.4191
0.0143
63166
ENSG00000248890
HHIP-AS1
HHIP antisense RNA 1
-3.4175
0.1298
63165
ENSG00000211706
TRBV6-1
T cell receptor beta variable 6-1
-3.4154
0.0725
63164
ENSG00000108511
HOXB6
homeobox B6
-3.4136
0.2659
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
download
Now loading...