Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849322

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1849322 Profile download	5030203000000000000000-761	Sequence Read Archive	SRP062328	SRP062328_M18	Human oocyte DNA methylome	Methylome	Oocyte (mature metaphase (MII) stage )	Human	Genitalia	Bisulfite-Seq (WGBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000140450	ARRDC4	arrestin domain containing 4	5.5546	0.0000
2	ENSG00000254273		chromatin accessibility complex protein 1 (CHRAC1) pseudogene	5.3923	0.0000
3	ENSG00000267013	LINC01929	long intergenic non-protein coding RNA 1929	5.3923	0.0000
4	ENSG00000135315	CEP162	centrosomal protein 162	5.3576	0.0000
5	ENSG00000184995	IFNE	interferon epsilon	5.3219	0.0000
6	ENSG00000210841	RNU6ATAC26P	RNA, U6atac small nuclear 26, pseudogene	5.3219	0.0000
7	ENSG00000237927		novel transcript	5.2849	0.0000
8	ENSG00000240997	RN7SL183P	RNA, 7SL, cytoplasmic 183, pseudogene	5.2277	0.0000
9	ENSG00000134538	SLCO1B1	solute carrier organic anion transporter family member 1B1	5.1699	0.0000
10	ENSG00000232719		novel transcript	5.1699	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63173	ENSG00000187855	ASCL4	achaete-scute family bHLH transcription factor 4	-3.4247	0.0029
63172	ENSG00000233365		novel transcript	-3.4245	0.0320
63171	ENSG00000112218	GPR63	G protein-coupled receptor 63	-3.4242	0.0437
63170	ENSG00000203985	LDLRAD1	low density lipoprotein receptor class A domain containing 1	-3.4221	0.1123
63169	ENSG00000123080	CDKN2C	cyclin dependent kinase inhibitor 2C	-3.4203	0.0000
63168	ENSG00000267388		novel transcript	-3.4200	0.0025
63167	ENSG00000279933		TEC	-3.4191	0.0143
63166	ENSG00000248890	HHIP-AS1	HHIP antisense RNA 1	-3.4175	0.1298
63165	ENSG00000211706	TRBV6-1	T cell receptor beta variable 6-1	-3.4154	0.0725
63164	ENSG00000108511	HOXB6	homeobox B6	-3.4136	0.2659

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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