Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849323

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849323


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5030203000000000000000-761Sequence Read ArchiveSRP062328SRP062328_M19Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MII) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000260398 novel transcript, overlapping to PKIA 5.2089 0.0000
2 ENSG00000228509 novel transcript, antisense to NAB1 5.1699 0.0000
3 ENSG00000258479 LINC00640 long intergenic non-protein coding RNA 640 5.1496 0.0000
4 ENSG00000199415 RNA5SP370 RNA, 5S ribosomal pseudogene 370 5.1293 0.0000
5 ENSG00000248968 novel transcript 4.9542 0.0000
6 ENSG00000213671 OLA1P2 OLA1 pseudogene 2 4.9069 0.0000
7 ENSG00000232713 RPS12P3 ribosomal protein S12 pseudogene 3 4.9069 0.0000
8 ENSG00000259149 novel transcript 4.8074 0.0000
9 ENSG00000267098 novel transcript 4.8074 0.0000
10 ENSG00000226427 HMGN2P7 high mobility group nucleosomal binding domain 2 pseudogene 7 4.7680 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000170236 USP50 ubiquitin specific peptidase 50 -3.1983 0.2627
63127 ENSG00000258873 DUXA double homeobox A -3.1977 0.0777
63126 ENSG00000284155 MIR194-2 microRNA 194-2 -3.1976 0.1766
63125 ENSG00000283926 MIR192 microRNA 192 -3.1976 0.1766
63124 ENSG00000264316 MTCO3P13 MT-CO3 pseudogene 13 -3.1956 0.0000
63123 ENSG00000253242 IGLVIV-64 immunoglobulin lambda variable (IV)-64 (pseudogene) -3.1950 0.4046
63122 ENSG00000284300 mitochondrially encoded NADH dehydrogenase 3 (MT-ND3) pseudogene -3.1937 0.0000
63121 ENSG00000254153 novel transcript -3.1933 0.4073
63120 ENSG00000253117 OC90 otoconin 90 -3.1933 0.4073
63119 ENSG00000115138 POMC proopiomelanocortin -3.1892 0.0238

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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