SHOGoiN Cell Methylome: GSM1900052-1

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900052-1


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M1Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000085423 4930594M22Rik RIKEN cDNA 4930594M22 gene 6.4094 0.0000
2 ENSMUSG00000027713 1810062G17Rik RIKEN cDNA 1810062G17 gene 6.2416 0.0000
3 ENSMUSG00000109220 Gm30196 predicted gene, 30196 6.2288 0.0000
4 ENSMUSG00000033623 Pcgf3 polycomb group ring finger 3 6.1898 0.0000
5 ENSMUSG00000105906 Iglc1 immunoglobulin lambda constant 1 6.0875 0.0000
6 ENSMUSG00000106668 Iglj1 immunoglobulin lambda joining 1 6.0875 0.0000
7 ENSMUSG00000111313 Gm18942 predicted gene, 18942 5.8955 0.0000
8 ENSMUSG00000107697 Gm44399 predicted gene, 44399 5.8826 0.0000
9 ENSMUSG00000108016 Gm8039 predicted gene 8039 5.8826 0.0000
10 ENSMUSG00000043008 Klhl6 kelch-like 6 5.8329 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000066571 4931406P16Rik RIKEN cDNA 4931406P16 gene -5.2033 0.0000
50853 ENSMUSG00000076361 Mir182 microRNA 182 -5.2010 0.0000
50852 ENSMUSG00000089933 Gm16101 predicted gene 16101 -5.1996 0.0000
50851 ENSMUSG00000062157 Ifnlr1 interferon lambda receptor 1 -5.1996 0.0000
50850 ENSMUSG00000028549 Itgb3bp integrin beta 3 binding protein (beta3-endonexin) -5.1989 0.0000
50849 ENSMUSG00000037151 Lrrc20 leucine rich repeat containing 20 -5.1931 0.0000
50848 ENSMUSG00000055334 Snupn snurportin 1 -5.1906 0.0000
50847 ENSMUSG00000109321 A330076H08Rik RIKEN cDNA A330076H08 gene -5.1897 0.0000
50846 ENSMUSG00000092850 Mir344g microRNA 344g -5.1897 0.0000
50845 ENSMUSG00000088226 Gm22596 predicted gene, 22596 -5.1897 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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