Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1900052-1

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900052-1


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M1Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000085423 4930594M22Rik RIKEN cDNA 4930594M22 gene 6.4094 0.0000
2 ENSMUSG00000027713 1810062G17Rik RIKEN cDNA 1810062G17 gene 6.2416 0.0000
3 ENSMUSG00000109220 Gm30196 predicted gene, 30196 6.2288 0.0000
4 ENSMUSG00000033623 Pcgf3 polycomb group ring finger 3 6.1898 0.0000
5 ENSMUSG00000105906 Iglc1 immunoglobulin lambda constant 1 6.0875 0.0000
6 ENSMUSG00000106668 Iglj1 immunoglobulin lambda joining 1 6.0875 0.0000
7 ENSMUSG00000111313 Gm18942 predicted gene, 18942 5.8955 0.0000
8 ENSMUSG00000107697 Gm44399 predicted gene, 44399 5.8826 0.0000
9 ENSMUSG00000108016 Gm8039 predicted gene 8039 5.8826 0.0000
10 ENSMUSG00000043008 Klhl6 kelch-like 6 5.8329 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000004070 Hmox2 heme oxygenase 2 -3.6791 0.0000
47080 ENSMUSG00000021360 Gcnt2 glucosaminyl (N-acetyl) transferase 2, I-branching enzyme -3.6786 0.0000
47079 ENSMUSG00000085982 9530051G07Rik RIKEN cDNA 9530051G07 gene -3.6785 0.0000
47078 ENSMUSG00000047238 Mageh1 MAGE family member H1 -3.6785 0.0000
47077 ENSMUSG00000094318 Gm13144 predicted gene 13144 -3.6784 0.0000
47076 ENSMUSG00000028863 Meaf6 MYST/Esa1-associated factor 6 -3.6782 0.0000
47074 ENSMUSG00000052353 Cemip cell migration inducing protein, hyaluronan binding -3.6772 0.0000
47073 ENSMUSG00000050229 Pigm phosphatidylinositol glycan anchor biosynthesis, class M -3.6771 0.0000
47072 ENSMUSG00000033318 Gstt2 glutathione S-transferase, theta 2 -3.6765 0.0000
10 ENSMUSG00000043008 Klhl6 kelch-like 6 5.8329 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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