SHOGoiN Cell Methylome: GSM1900052-2

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900052-2


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M2Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000107697 Gm44399 predicted gene, 44399 6.3399 0.0000
2 ENSMUSG00000110116 4933430A20Rik RIKEN cDNA 4933430A20 gene 6.2479 0.0000
3 ENSMUSG00000110321 Gm39164 predicted gene, 39164 6.2479 0.0000
4 ENSMUSG00000109220 Gm30196 predicted gene, 30196 6.2095 0.0000
5 ENSMUSG00000097694 G730013B05Rik RIKEN cDNA G730013B05 gene 6.0618 0.0000
6 ENSMUSG00000111180 Gm39348 predicted gene, 39348 5.9962 0.0000
7 ENSMUSG00000076749 Tcrg-C1 T cell receptor gamma, constant 1 5.9384 0.0000
9 ENSMUSG00000021256 Vash1 vasohibin 1 5.8329 0.0000
10 ENSMUSG00000100843 Gm8307 predicted gene 8307 5.8329 0.0000
50845 ENSMUSG00000091556 Gm14569 predicted gene 14569 -5.2095 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000109745 1700018G05Rik RIKEN cDNA 1700018G05 gene -5.2095 0.0000
50853 ENSMUSG00000109321 A330076H08Rik RIKEN cDNA A330076H08 gene -5.2095 0.0000
50852 ENSMUSG00000107732 Gm44204 predicted gene, 44204 -5.2095 0.0000
50851 ENSMUSG00000106101 Gm43438 predicted gene 43438 -5.2095 0.0000
50850 ENSMUSG00000103862 Gm10764 predicted gene 10764 -5.2095 0.0016
50849 ENSMUSG00000103800 Pcdha8 protocadherin alpha 8 -5.2095 0.0000
50848 ENSMUSG00000103114 Gm32200 predicted gene, 32200 -5.2095 0.0000
50847 ENSMUSG00000099564 Gm28729 predicted gene 28729 -5.2095 0.0000
50846 ENSMUSG00000092850 Mir344g microRNA 344g -5.2095 0.0000
50845 ENSMUSG00000091556 Gm14569 predicted gene 14569 -5.2095 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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