Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1900052-2

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1900052-2 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP052901	SRP052901_M2	Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinoma	Methylome	Embryonic stem cell	Mouse	Early embryonic tissue	Bisulfite-Seq (RRBS), Trio-seq	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSMUSG00000107697	Gm44399	predicted gene, 44399	6.3399	0.0000
2	ENSMUSG00000110116	4933430A20Rik	RIKEN cDNA 4933430A20 gene	6.2479	0.0000
3	ENSMUSG00000110321	Gm39164	predicted gene, 39164	6.2479	0.0000
4	ENSMUSG00000109220	Gm30196	predicted gene, 30196	6.2095	0.0000
5	ENSMUSG00000097694	G730013B05Rik	RIKEN cDNA G730013B05 gene	6.0618	0.0000
6	ENSMUSG00000111180	Gm39348	predicted gene, 39348	5.9962	0.0000
7	ENSMUSG00000076749	Trgc1	T cell receptor gamma, constant 1	5.9384	0.0000
9	ENSMUSG00000021256	Vash1	vasohibin 1	5.8329	0.0000
10	ENSMUSG00000100843	Gm8307	predicted gene 8307	5.8329	0.0000
47072	ENSMUSG00000098515	Gm27195	predicted gene 27195	-3.6821	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
47081	ENSMUSG00000020875	Hoxb9	homeobox B9	-3.6848	0.0000
47080	ENSMUSG00000062961	Ccdc177	coiled-coil domain containing 177	-3.6847	0.0000
47079	ENSMUSG00000110481	Gm45705	predicted gene 45705	-3.6847	0.0000
47078	ENSMUSG00000053040	Aph1c	aph1 homolog C, gamma secretase subunit	-3.6846	0.0000
47077	ENSMUSG00000027852	Nras	neuroblastoma ras oncogene	-3.6844	0.0000
47076	ENSMUSG00000060843	Ctnna3	catenin (cadherin associated protein), alpha 3	-3.6839	0.0000
47075	ENSMUSG00000062987	Olfr715b	olfactory receptor 715B	-3.6824	0.0002
47074	ENSMUSG00000097877	Gm26703	predicted gene, 26703	-3.6821	0.0000
47073	ENSMUSG00000029309	Sparcl1	SPARC-like 1	-3.6821	0.0000
47072	ENSMUSG00000098515	Gm27195	predicted gene 27195	-3.6821	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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