Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM1900052-2
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1900052-2
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP052901
SRP052901_M2
Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinoma
Methylome
Embryonic stem cell
Mouse
Early embryonic tissue
Bisulfite-Seq (RRBS), Trio-seq
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000107697
Gm44399
predicted gene, 44399
6.3399
0.0000
2
ENSMUSG00000110116
4933430A20Rik
RIKEN cDNA 4933430A20 gene
6.2479
0.0000
3
ENSMUSG00000110321
Gm39164
predicted gene, 39164
6.2479
0.0000
4
ENSMUSG00000109220
Gm30196
predicted gene, 30196
6.2095
0.0000
5
ENSMUSG00000097694
G730013B05Rik
RIKEN cDNA G730013B05 gene
6.0618
0.0000
6
ENSMUSG00000111180
Gm39348
predicted gene, 39348
5.9962
0.0000
7
ENSMUSG00000076749
Trgc1
T cell receptor gamma, constant 1
5.9384
0.0000
9
ENSMUSG00000021256
Vash1
vasohibin 1
5.8329
0.0000
10
ENSMUSG00000100843
Gm8307
predicted gene 8307
5.8329
0.0000
47072
ENSMUSG00000098515
Gm27195
predicted gene 27195
-3.6821
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000020875
Hoxb9
homeobox B9
-3.6848
0.0000
47080
ENSMUSG00000062961
Ccdc177
coiled-coil domain containing 177
-3.6847
0.0000
47079
ENSMUSG00000110481
Gm45705
predicted gene 45705
-3.6847
0.0000
47078
ENSMUSG00000053040
Aph1c
aph1 homolog C, gamma secretase subunit
-3.6846
0.0000
47077
ENSMUSG00000027852
Nras
neuroblastoma ras oncogene
-3.6844
0.0000
47076
ENSMUSG00000060843
Ctnna3
catenin (cadherin associated protein), alpha 3
-3.6839
0.0000
47075
ENSMUSG00000062987
Olfr715b
olfactory receptor 715B
-3.6824
0.0002
47074
ENSMUSG00000097877
Gm26703
predicted gene, 26703
-3.6821
0.0000
47073
ENSMUSG00000029309
Sparcl1
SPARC-like 1
-3.6821
0.0000
47072
ENSMUSG00000098515
Gm27195
predicted gene 27195
-3.6821
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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