SHOGoiN Cell Methylome: GSM1900052-2
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1900052-2 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP052901 | SRP052901_M2 | Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinoma | Methylome | Embryonic stem cell | Mouse | Early embryonic tissue | Bisulfite-Seq (RRBS), Trio-seq | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000107697 | Gm44399 | predicted gene, 44399 | 6.3399 | 0.0000 |
| 2 | ENSMUSG00000110116 | 4933430A20Rik | RIKEN cDNA 4933430A20 gene | 6.2479 | 0.0000 |
| 3 | ENSMUSG00000110321 | Gm39164 | predicted gene, 39164 | 6.2479 | 0.0000 |
| 4 | ENSMUSG00000109220 | Gm30196 | predicted gene, 30196 | 6.2095 | 0.0000 |
| 5 | ENSMUSG00000097694 | G730013B05Rik | RIKEN cDNA G730013B05 gene | 6.0618 | 0.0000 |
| 6 | ENSMUSG00000111180 | Gm39348 | predicted gene, 39348 | 5.9962 | 0.0000 |
| 7 | ENSMUSG00000076749 | Tcrg-C1 | T cell receptor gamma, constant 1 | 5.9384 | 0.0000 |
| 9 | ENSMUSG00000021256 | Vash1 | vasohibin 1 | 5.8329 | 0.0000 |
| 10 | ENSMUSG00000100843 | Gm8307 | predicted gene 8307 | 5.8329 | 0.0000 |
| 50845 | ENSMUSG00000091556 | Gm14569 | predicted gene 14569 | -5.2095 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50854 | ENSMUSG00000109745 | 1700018G05Rik | RIKEN cDNA 1700018G05 gene | -5.2095 | 0.0000 |
| 50853 | ENSMUSG00000109321 | A330076H08Rik | RIKEN cDNA A330076H08 gene | -5.2095 | 0.0000 |
| 50852 | ENSMUSG00000107732 | Gm44204 | predicted gene, 44204 | -5.2095 | 0.0000 |
| 50851 | ENSMUSG00000106101 | Gm43438 | predicted gene 43438 | -5.2095 | 0.0000 |
| 50850 | ENSMUSG00000103862 | Gm10764 | predicted gene 10764 | -5.2095 | 0.0016 |
| 50849 | ENSMUSG00000103800 | Pcdha8 | protocadherin alpha 8 | -5.2095 | 0.0000 |
| 50848 | ENSMUSG00000103114 | Gm32200 | predicted gene, 32200 | -5.2095 | 0.0000 |
| 50847 | ENSMUSG00000099564 | Gm28729 | predicted gene 28729 | -5.2095 | 0.0000 |
| 50846 | ENSMUSG00000092850 | Mir344g | microRNA 344g | -5.2095 | 0.0000 |
| 50845 | ENSMUSG00000091556 | Gm14569 | predicted gene 14569 | -5.2095 | 0.0000 |
