Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1900052-2

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900052-2


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M2Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000107697 Gm44399 predicted gene, 44399 6.3399 0.0000
2 ENSMUSG00000110116 4933430A20Rik RIKEN cDNA 4933430A20 gene 6.2479 0.0000
3 ENSMUSG00000110321 Gm39164 predicted gene, 39164 6.2479 0.0000
4 ENSMUSG00000109220 Gm30196 predicted gene, 30196 6.2095 0.0000
5 ENSMUSG00000097694 G730013B05Rik RIKEN cDNA G730013B05 gene 6.0618 0.0000
6 ENSMUSG00000111180 Gm39348 predicted gene, 39348 5.9962 0.0000
7 ENSMUSG00000076749 Trgc1 T cell receptor gamma, constant 1 5.9384 0.0000
9 ENSMUSG00000021256 Vash1 vasohibin 1 5.8329 0.0000
10 ENSMUSG00000100843 Gm8307 predicted gene 8307 5.8329 0.0000
47072 ENSMUSG00000098515 Gm27195 predicted gene 27195 -3.6821 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000020875 Hoxb9 homeobox B9 -3.6848 0.0000
47080 ENSMUSG00000062961 Ccdc177 coiled-coil domain containing 177 -3.6847 0.0000
47079 ENSMUSG00000110481 Gm45705 predicted gene 45705 -3.6847 0.0000
47078 ENSMUSG00000053040 Aph1c aph1 homolog C, gamma secretase subunit -3.6846 0.0000
47077 ENSMUSG00000027852 Nras neuroblastoma ras oncogene -3.6844 0.0000
47076 ENSMUSG00000060843 Ctnna3 catenin (cadherin associated protein), alpha 3 -3.6839 0.0000
47075 ENSMUSG00000062987 Olfr715b olfactory receptor 715B -3.6824 0.0002
47074 ENSMUSG00000097877 Gm26703 predicted gene, 26703 -3.6821 0.0000
47073 ENSMUSG00000029309 Sparcl1 SPARC-like 1 -3.6821 0.0000
47072 ENSMUSG00000098515 Gm27195 predicted gene 27195 -3.6821 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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