SHOGoiN Cell Methylome: GSM1900054-1
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1900054-1 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP052901 | SRP052901_M3 | Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinoma | Methylome | Embryonic stem cell | Mouse | Early embryonic tissue | Bisulfite-Seq (RRBS), Trio-seq | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000021798 | Ldb3 | LIM domain binding 3 | 6.0444 | 0.0000 |
| 2 | ENSMUSG00000104920 | Gm43215 | predicted gene 43215 | 5.8329 | 0.0000 |
| 3 | ENSMUSG00000038750 | Omt2b | oocyte maturation, beta | 5.7279 | 0.0000 |
| 4 | ENSMUSG00000090802 | Gm8074 | predicted gene 8074 | 5.7279 | 0.0000 |
| 5 | ENSMUSG00000107464 | Gm44150 | predicted gene, 44150 | 5.7279 | 0.0000 |
| 6 | ENSMUSG00000034785 | Dio1 | deiodinase, iodothyronine, type I | 5.6724 | 0.0000 |
| 7 | ENSMUSG00000024560 | Cxxc1 | CXXC finger 1 (PHD domain) | 5.6430 | 0.0000 |
| 8 | ENSMUSG00000111052 | Gm20139 | predicted gene, 20139 | 5.5574 | 0.0000 |
| 9 | ENSMUSG00000046840 | Hnf4aos | hepatic nuclear factor 4 alpha, opposite strand | 5.5236 | 0.0000 |
| 50845 | ENSMUSG00000042433 | Pih1h3b | PIH1 domain containing 3B | -4.8829 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50854 | ENSMUSG00000031146 | Plp2 | proteolipid protein 2 | -4.8947 | 0.0000 |
| 50853 | ENSMUSG00000056648 | Hoxb8 | homeobox B8 | -4.8938 | 0.0000 |
| 50852 | ENSMUSG00000021967 | Mrpl57 | mitochondrial ribosomal protein L57 | -4.8900 | 0.0000 |
| 50851 | ENSMUSG00000022771 | Ppil2 | peptidylprolyl isomerase (cyclophilin)-like 2 | -4.8889 | 0.0000 |
| 50850 | ENSMUSG00000041794 | Myrip | myosin VIIA and Rab interacting protein | -4.8886 | 0.0000 |
| 50849 | ENSMUSG00000024069 | Slc30a6 | solute carrier family 30 (zinc transporter), member 6 | -4.8873 | 0.0000 |
| 50848 | ENSMUSG00000041571 | Selenow | selenoprotein W | -4.8858 | 0.0000 |
| 50847 | ENSMUSG00000021965 | Ska3 | spindle and kinetochore associated complex subunit 3 | -4.8834 | 0.0000 |
| 50846 | ENSMUSG00000072944 | Nup62cl | nucleoporin 62 C-terminal like | -4.8829 | 0.0000 |
| 50845 | ENSMUSG00000042433 | Pih1h3b | PIH1 domain containing 3B | -4.8829 | 0.0000 |
