Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM1900054-1
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1900054-1
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP052901
SRP052901_M3
Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinoma
Methylome
Embryonic stem cell
Mouse
Early embryonic tissue
Bisulfite-Seq (RRBS), Trio-seq
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000021798
Ldb3
LIM domain binding 3
6.0444
0.0000
2
ENSMUSG00000104920
Gm43215
predicted gene 43215
5.8329
0.0000
3
ENSMUSG00000038750
Omt2b
oocyte maturation, beta
5.7279
0.0000
4
ENSMUSG00000090802
Gm8074
predicted gene 8074
5.7279
0.0000
5
ENSMUSG00000107464
Gm44150
predicted gene, 44150
5.7279
0.0000
6
ENSMUSG00000034785
Dio1
deiodinase, iodothyronine, type I
5.6724
0.0000
7
ENSMUSG00000024560
Cxxc1
CXXC finger 1 (PHD domain)
5.6430
0.0000
8
ENSMUSG00000111052
Gm20139
predicted gene, 20139
5.5574
0.0000
9
ENSMUSG00000046840
Hnf4aos
hepatic nuclear factor 4 alpha, opposite strand
5.5236
0.0000
47072
ENSMUSG00000040312
Cchcr1
coiled-coil alpha-helical rod protein 1
-3.3516
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000033313
Fbxl8
F-box and leucine-rich repeat protein 8
-3.3576
0.0000
47080
ENSMUSG00000041774
Ydjc
YdjC homolog (bacterial)
-3.3569
0.0000
47079
ENSMUSG00000022792
Yars2
tyrosyl-tRNA synthetase 2 (mitochondrial)
-3.3560
0.0000
47078
ENSMUSG00000105284
Gm42693
predicted gene 42693
-3.3559
0.0000
47077
ENSMUSG00000085733
Arhgap27os1
Rho GTPase activating protein 27, opposite strand 1
-3.3555
0.0000
47076
ENSMUSG00000037966
Ninj1
ninjurin 1
-3.3551
0.0000
47075
ENSMUSG00000035458
Tnni3
troponin I, cardiac 3
-3.3541
0.0000
47074
ENSMUSG00000065176
Rnu12
RNA U12, small nuclear
-3.3521
0.0000
47073
ENSMUSG00000085134
Gm11659
predicted gene 11659
-3.3521
0.0000
47072
ENSMUSG00000040312
Cchcr1
coiled-coil alpha-helical rod protein 1
-3.3516
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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