SHOGoiN Cell Methylome: GSM1900054-1

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900054-1


Profile download
7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M3Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000021798 Ldb3 LIM domain binding 3 6.0444 0.0000
2 ENSMUSG00000104920 Gm43215 predicted gene 43215 5.8329 0.0000
3 ENSMUSG00000038750 Omt2b oocyte maturation, beta 5.7279 0.0000
4 ENSMUSG00000090802 Gm8074 predicted gene 8074 5.7279 0.0000
5 ENSMUSG00000107464 Gm44150 predicted gene, 44150 5.7279 0.0000
6 ENSMUSG00000034785 Dio1 deiodinase, iodothyronine, type I 5.6724 0.0000
7 ENSMUSG00000024560 Cxxc1 CXXC finger 1 (PHD domain) 5.6430 0.0000
8 ENSMUSG00000111052 Gm20139 predicted gene, 20139 5.5574 0.0000
9 ENSMUSG00000046840 Hnf4aos hepatic nuclear factor 4 alpha, opposite strand 5.5236 0.0000
50845 ENSMUSG00000042433 Pih1h3b PIH1 domain containing 3B -4.8829 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000031146 Plp2 proteolipid protein 2 -4.8947 0.0000
50853 ENSMUSG00000056648 Hoxb8 homeobox B8 -4.8938 0.0000
50852 ENSMUSG00000021967 Mrpl57 mitochondrial ribosomal protein L57 -4.8900 0.0000
50851 ENSMUSG00000022771 Ppil2 peptidylprolyl isomerase (cyclophilin)-like 2 -4.8889 0.0000
50850 ENSMUSG00000041794 Myrip myosin VIIA and Rab interacting protein -4.8886 0.0000
50849 ENSMUSG00000024069 Slc30a6 solute carrier family 30 (zinc transporter), member 6 -4.8873 0.0000
50848 ENSMUSG00000041571 Selenow selenoprotein W -4.8858 0.0000
50847 ENSMUSG00000021965 Ska3 spindle and kinetochore associated complex subunit 3 -4.8834 0.0000
50846 ENSMUSG00000072944 Nup62cl nucleoporin 62 C-terminal like -4.8829 0.0000
50845 ENSMUSG00000042433 Pih1h3b PIH1 domain containing 3B -4.8829 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...