SHOGoiN Cell Methylome: GSM1900054-1
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1900054-1 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP052901 | SRP052901_M3 | Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinoma | Methylome | Embryonic stem cell | Mouse | Early embryonic tissue | Bisulfite-Seq (RRBS), Trio-seq | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000021798 | Ldb3 | LIM domain-binding protein 3 | 6.0444 | 0.0000 |
| 2 | ENSMUSG00000104920 | Gm43215 | predicted gene 43215 | 5.8329 | 0.0000 |
| 3 | ENSMUSG00000038750 | Omt2b | NA | 5.7279 | 0.0000 |
| 4 | ENSMUSG00000090802 | Gm8074 | predicted gene 8074 | 5.7279 | 0.0000 |
| 5 | ENSMUSG00000107464 | Gm44150 | predicted gene, 44150 | 5.7279 | 0.0000 |
| 6 | ENSMUSG00000034785 | Dio1 | type I iodothyronine deiodinase | 5.6724 | 0.0000 |
| 7 | ENSMUSG00000024560 | Cxxc1 | CXXC-type zinc finger protein 1 | 5.6430 | 0.0000 |
| 8 | ENSMUSG00000111052 | Gm20139 | predicted gene, 20139 | 5.5574 | 0.0000 |
| 9 | ENSMUSG00000046840 | Hnf4aos | NA | 5.5236 | 0.0000 |
| 50989 | ENSMUSG00000033419 | Snap91 | synaptosomal-associated protein 91 | -5.0444 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50998 | ENSMUSG00000051235 | Gen1 | Flap endonuclease GEN homolog 1 | -5.0464 | 0.0000 |
| 50997 | ENSMUSG00000110054 | Gm18851 | predicted gene, 18851 | -5.0444 | 0.0024 |
| 50996 | ENSMUSG00000105987 | AI506816 | expressed sequence AI506816 | -5.0444 | 0.0000 |
| 50995 | ENSMUSG00000096832 | Mir3096 | microRNA 3096 | -5.0444 | 0.0000 |
| 50994 | ENSMUSG00000094388 | Gm8783 | predicted pseudogene 8783 | -5.0444 | 0.0000 |
| 50993 | ENSMUSG00000082517 | Gm5757 | predicted gene 5757 | -5.0444 | 0.0024 |
| 50992 | ENSMUSG00000052012 | Olfr796 | olfactory receptor family 10 subfamily P member 1 | -5.0444 | 0.0024 |
| 50991 | ENSMUSG00000051469 | Zfp24 | zinc finger protein 24 | -5.0444 | 0.0000 |
| 50990 | ENSMUSG00000036036 | Zfp57 | zinc finger protein 57 | -5.0444 | 0.0024 |
| 50989 | ENSMUSG00000033419 | Snap91 | synaptosomal-associated protein 91 | -5.0444 | 0.0000 |
