Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1900054-1

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900054-1


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M3Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000021798 Ldb3 LIM domain binding 3 6.0444 0.0000
2 ENSMUSG00000104920 Gm43215 predicted gene 43215 5.8329 0.0000
3 ENSMUSG00000038750 Omt2b oocyte maturation, beta 5.7279 0.0000
4 ENSMUSG00000090802 Gm8074 predicted gene 8074 5.7279 0.0000
5 ENSMUSG00000107464 Gm44150 predicted gene, 44150 5.7279 0.0000
6 ENSMUSG00000034785 Dio1 deiodinase, iodothyronine, type I 5.6724 0.0000
7 ENSMUSG00000024560 Cxxc1 CXXC finger 1 (PHD domain) 5.6430 0.0000
8 ENSMUSG00000111052 Gm20139 predicted gene, 20139 5.5574 0.0000
9 ENSMUSG00000046840 Hnf4aos hepatic nuclear factor 4 alpha, opposite strand 5.5236 0.0000
47072 ENSMUSG00000040312 Cchcr1 coiled-coil alpha-helical rod protein 1 -3.3516 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000033313 Fbxl8 F-box and leucine-rich repeat protein 8 -3.3576 0.0000
47080 ENSMUSG00000041774 Ydjc YdjC homolog (bacterial) -3.3569 0.0000
47079 ENSMUSG00000022792 Yars2 tyrosyl-tRNA synthetase 2 (mitochondrial) -3.3560 0.0000
47078 ENSMUSG00000105284 Gm42693 predicted gene 42693 -3.3559 0.0000
47077 ENSMUSG00000085733 Arhgap27os1 Rho GTPase activating protein 27, opposite strand 1 -3.3555 0.0000
47076 ENSMUSG00000037966 Ninj1 ninjurin 1 -3.3551 0.0000
47075 ENSMUSG00000035458 Tnni3 troponin I, cardiac 3 -3.3541 0.0000
47074 ENSMUSG00000065176 Rnu12 RNA U12, small nuclear -3.3521 0.0000
47073 ENSMUSG00000085134 Gm11659 predicted gene 11659 -3.3521 0.0000
47072 ENSMUSG00000040312 Cchcr1 coiled-coil alpha-helical rod protein 1 -3.3516 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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