Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1900054-1

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1900054-1 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP052901	SRP052901_M3	Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinoma	Methylome	Embryonic stem cell	Mouse	Early embryonic tissue	Bisulfite-Seq (RRBS), Trio-seq	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSMUSG00000021798	Ldb3	LIM domain binding 3	6.0444	0.0000
2	ENSMUSG00000104920	Gm43215	predicted gene 43215	5.8329	0.0000
3	ENSMUSG00000038750	Omt2b	oocyte maturation, beta	5.7279	0.0000
4	ENSMUSG00000090802	Gm8074	predicted gene 8074	5.7279	0.0000
5	ENSMUSG00000107464	Gm44150	predicted gene, 44150	5.7279	0.0000
6	ENSMUSG00000034785	Dio1	deiodinase, iodothyronine, type I	5.6724	0.0000
7	ENSMUSG00000024560	Cxxc1	CXXC finger 1 (PHD domain)	5.6430	0.0000
8	ENSMUSG00000111052	Gm20139	predicted gene, 20139	5.5574	0.0000
9	ENSMUSG00000046840	Hnf4aos	hepatic nuclear factor 4 alpha, opposite strand	5.5236	0.0000
47072	ENSMUSG00000040312	Cchcr1	coiled-coil alpha-helical rod protein 1	-3.3516	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
47081	ENSMUSG00000033313	Fbxl8	F-box and leucine-rich repeat protein 8	-3.3576	0.0000
47080	ENSMUSG00000041774	Ydjc	YdjC homolog (bacterial)	-3.3569	0.0000
47079	ENSMUSG00000022792	Yars2	tyrosyl-tRNA synthetase 2 (mitochondrial)	-3.3560	0.0000
47078	ENSMUSG00000105284	Gm42693	predicted gene 42693	-3.3559	0.0000
47077	ENSMUSG00000085733	Arhgap27os1	Rho GTPase activating protein 27, opposite strand 1	-3.3555	0.0000
47076	ENSMUSG00000037966	Ninj1	ninjurin 1	-3.3551	0.0000
47075	ENSMUSG00000035458	Tnni3	troponin I, cardiac 3	-3.3541	0.0000
47074	ENSMUSG00000065176	Rnu12	RNA U12, small nuclear	-3.3521	0.0000
47073	ENSMUSG00000085134	Gm11659	predicted gene 11659	-3.3521	0.0000
47072	ENSMUSG00000040312	Cchcr1	coiled-coil alpha-helical rod protein 1	-3.3516	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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