Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1900054-2

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900054-2


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M4Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000104920 Gm43215 predicted gene 43215 6.0768 0.0000
2 ENSMUSG00000038750 Omt2b oocyte maturation, beta 6.0224 0.0000
3 ENSMUSG00000090802 Gm8074 predicted gene 8074 6.0224 0.0000
4 ENSMUSG00000018126 Baiap2l2 BAI1-associated protein 2-like 2 5.9542 0.0000
5 ENSMUSG00000021798 Ldb3 LIM domain binding 3 5.6724 0.0000
6 ENSMUSG00000111052 Gm20139 predicted gene, 20139 5.6242 0.0000
7 ENSMUSG00000034768 Asb16 ankyrin repeat and SOCS box-containing 16 5.5691 0.0000
8 ENSMUSG00000090224 Gm15974 predicted gene 15974 5.5236 0.0000
9 ENSMUSG00000024560 Cxxc1 CXXC finger 1 (PHD domain) 5.5156 0.0000
10 ENSMUSG00000053896 4933409G03Rik RIKEN cDNA 4933409G03 gene 5.4594 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000068115 Ninl ninein-like -3.3321 0.0000
47080 ENSMUSG00000028047 Thbs3 thrombospondin 3 -3.3316 0.0000
47079 ENSMUSG00000023951 Vegfa vascular endothelial growth factor A -3.3316 0.0000
47078 ENSMUSG00000087383 Gm12446 predicted gene 12446 -3.3308 0.0326
47077 ENSMUSG00000070990 Foxe1 forkhead box E1 -3.3308 0.0326
47076 ENSMUSG00000010097 Nxf1 nuclear RNA export factor 1 -3.3305 0.0000
47075 ENSMUSG00000097004 4731419I09Rik RIKEN cDNA 4731419I09 gene -3.3304 0.0000
47074 ENSMUSG00000040478 Prdm13 PR domain containing 13 -3.3303 0.0000
47073 ENSMUSG00000066113 Adamtsl1 ADAMTS-like 1 -3.3286 0.0000
47072 ENSMUSG00000000489 Pdgfb platelet derived growth factor, B polypeptide -3.3284 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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