SHOGoiN Cell Methylome: GSM1900054-2

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900054-2


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M4Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000104920 Gm43215 predicted gene 43215 6.0768 0.0000
2 ENSMUSG00000038750 Omt2b oocyte maturation, beta 6.0224 0.0000
3 ENSMUSG00000090802 Gm8074 predicted gene 8074 6.0224 0.0000
4 ENSMUSG00000018126 Baiap2l2 BAI1-associated protein 2-like 2 5.9542 0.0000
5 ENSMUSG00000021798 Ldb3 LIM domain binding 3 5.6724 0.0000
6 ENSMUSG00000111052 Gm20139 predicted gene, 20139 5.6242 0.0000
7 ENSMUSG00000034768 Asb16 ankyrin repeat and SOCS box-containing 16 5.5691 0.0000
8 ENSMUSG00000090224 Gm15974 predicted gene 15974 5.5236 0.0000
9 ENSMUSG00000024560 Cxxc1 CXXC finger 1 (PHD domain) 5.5156 0.0000
10 ENSMUSG00000053896 4933409G03Rik RIKEN cDNA 4933409G03 gene 5.4594 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000109014 Gm44546 predicted gene 44546 -4.8580 0.0000
50853 ENSMUSG00000104481 Gm38063 predicted gene, 38063 -4.8580 0.0034
50852 ENSMUSG00000102336 Gm37233 predicted gene, 37233 -4.8580 0.0000
50851 ENSMUSG00000098396 Gm27997 predicted gene, 27997 -4.8580 0.0000
50850 ENSMUSG00000096856 Gm10778 predicted gene 10778 -4.8580 0.0000
50849 ENSMUSG00000093606 B130034C11Rik RIKEN cDNA B130034C11 gene -4.8580 0.0000
50848 ENSMUSG00000092852 Mir5103 microRNA 5103 -4.8580 0.0034
50847 ENSMUSG00000092179 Vmn2r-ps75 vomeronasal 2, receptor, pseudogene 75 -4.8580 0.0000
50846 ENSMUSG00000087517 4930577H14Rik RIKEN cDNA 4930577H14 gene -4.8580 0.0034
50845 ENSMUSG00000087362 Gm13710 predicted gene 13710 -4.8580 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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