SHOGoiN Cell Methylome: GSM1900056-1

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900056-1


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M5Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000095446 Gm25730 predicted gene, 25730 5.5546 0.0000
2 ENSMUSG00000080749 Gm12134 predicted gene 12134 5.0875 0.0000
3 ENSMUSG00000098879 Mir7675 microRNA 7675 5.0875 0.0000
4 ENSMUSG00000055725 Paqr3 progestin and adipoQ receptor family member III 5.0403 0.0000
5 ENSMUSG00000107490 Gm44058 predicted gene, 44058 5.0000 0.0000
6 ENSMUSG00000110589 Gm45754 predicted gene 45754 4.9537 0.0000
7 ENSMUSG00000106479 Mir721 microRNA 721 4.9069 0.0000
8 ENSMUSG00000042306 S100a14 S100 calcium binding protein A14 4.8824 0.0000
9 ENSMUSG00000045427 Hnrnph2 heterogeneous nuclear ribonucleoprotein H2 4.8580 0.0000
10 ENSMUSG00000062638 Btnl1 butyrophilin-like 1 4.8074 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000031467 Agpat5 1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon) -4.0654 0.0000
50853 ENSMUSG00000097360 9430065F17Rik RIKEN cDNA 9430065F17 gene -4.0621 0.0000
50852 ENSMUSG00000095432 Zfp748 zinc finger protein 748 -4.0621 0.0000
50851 ENSMUSG00000101615 Gm8495 predicted gene 8495 -4.0591 0.0000
50850 ENSMUSG00000038836 Agbl3 ATP/GTP binding protein-like 3 -4.0589 0.0000
50849 ENSMUSG00000105960 6330410L21Rik RIKEN cDNA 6330410L21 gene -4.0525 0.0000
50848 ENSMUSG00000105596 Gm42650 predicted gene 42650 -4.0525 0.0000
50847 ENSMUSG00000026429 Ube2t ubiquitin-conjugating enzyme E2T -4.0525 0.0000
50846 ENSMUSG00000025872 Thoc3 THO complex 3 -4.0456 0.0000
50845 ENSMUSG00000014769 Psmb1 proteasome (prosome, macropain) subunit, beta type 1 -4.0444 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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