Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1900056-1

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900056-1


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M5Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
2 ENSMUSG00000080749 Gm12134 predicted gene 12134 5.0875 0.0000
3 ENSMUSG00000098879 Mir7675 microRNA 7675 5.0875 0.0000
4 ENSMUSG00000055725 Paqr3 progestin and adipoQ receptor family member III 5.0403 0.0000
5 ENSMUSG00000107490 Gm44058 predicted gene, 44058 5.0000 0.0000
6 ENSMUSG00000110589 Gm45754 predicted gene 45754 4.9537 0.0000
7 ENSMUSG00000106479 Mir721 microRNA 721 4.9069 0.0000
8 ENSMUSG00000042306 S100a14 S100 calcium binding protein A14 4.8824 0.0000
9 ENSMUSG00000045427 Hnrnph2 heterogeneous nuclear ribonucleoprotein H2 4.8580 0.0000
10 ENSMUSG00000062638 Btnl1 butyrophilin-like 1 4.8074 0.0000
47072 ENSMUSG00000025374 Nabp2 nucleic acid binding protein 2 -2.8730 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000036459 Wtip WT1-interacting protein -2.8746 0.0000
47080 ENSMUSG00000108148 Gm44020 predicted gene, 44020 -2.8745 0.0000
47079 ENSMUSG00000108035 Gm44021 predicted gene, 44021 -2.8745 0.0000
47077 ENSMUSG00000071033 Gm10308 predicted gene 10308 -2.8744 0.0053
47076 ENSMUSG00000075770 Gm22589 predicted gene, 22589 -2.8742 0.0000
47075 ENSMUSG00000057054 Inca1 inhibitor of CDK, cyclin A1 interacting protein 1 -2.8737 0.0000
47074 ENSMUSG00000086902 Gm11728 predicted gene 11728 -2.8732 0.0938
47073 ENSMUSG00000013483 Card14 caspase recruitment domain family, member 14 -2.8731 0.0000
47072 ENSMUSG00000025374 Nabp2 nucleic acid binding protein 2 -2.8730 0.0000
10 ENSMUSG00000062638 Btnl1 butyrophilin-like 1 4.8074 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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