Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1900056-2

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900056-2


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M6Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
3 ENSMUSG00000110589 Gm45754 predicted gene 45754 5.2095 0.0000
4 ENSMUSG00000098879 Mir7675 microRNA 7675 5.1699 0.0000
5 ENSMUSG00000100969 1700030N03Rik RIKEN cDNA 1700030N03 gene 5.1293 0.0000
6 ENSMUSG00000055725 Paqr3 progestin and adipoQ receptor family member III 5.1159 0.0000
7 ENSMUSG00000042306 S100a14 S100 calcium binding protein A14 5.1011 0.0000
8 ENSMUSG00000060149 BC002059 cDNA sequence BC002059 5.0444 0.0000
9 ENSMUSG00000022425 Enpp2 ectonucleotide pyrophosphatase/phosphodiesterase 2 4.9542 0.0000
10 ENSMUSG00000045427 Hnrnph2 heterogeneous nuclear ribonucleoprotein H2 4.9542 0.0000
47072 ENSMUSG00000056537 Rlim ring finger protein, LIM domain interacting -2.8816 0.0000
47073 ENSMUSG00000027525 Phactr3 phosphatase and actin regulator 3 -2.8820 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000016664 Pacsin2 protein kinase C and casein kinase substrate in neurons 2 -2.8831 0.0000
47080 ENSMUSG00000042821 Snai1 snail family zinc finger 1 -2.8829 0.0002
47079 ENSMUSG00000020986 Sec23a SEC23 homolog A, COPII coat complex component -2.8828 0.0001
47078 ENSMUSG00000086859 Snhg20 small nucleolar RNA host gene 20 -2.8828 0.3508
47077 ENSMUSG00000105676 Gm43403 predicted gene 43403 -2.8827 0.0000
47076 ENSMUSG00000107197 Gm43312 predicted gene 43312 -2.8823 0.0000
47075 ENSMUSG00000044150 Bclaf3 Bclaf1 and Thrap3 family member 3 -2.8823 0.0000
47074 ENSMUSG00000073394 Runx2os1 runt related transcription factor 2, opposite strand 1 -2.8823 0.0000
47073 ENSMUSG00000027525 Phactr3 phosphatase and actin regulator 3 -2.8820 0.0000
47072 ENSMUSG00000056537 Rlim ring finger protein, LIM domain interacting -2.8816 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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