SHOGoiN Cell Methylome: GSM1900056-2
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1900056-2 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP052901 | SRP052901_M6 | Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinoma | Methylome | Embryonic stem cell | Mouse | Early embryonic tissue | Bisulfite-Seq (RRBS), Trio-seq | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000095446 | Gm25730 | predicted gene, 25730 | 5.2479 | 0.0000 |
| 2 | ENSMUSG00000106138 | Gm44392 | predicted gene, 44392 | 5.2095 | 0.0000 |
| 3 | ENSMUSG00000110589 | Gm45754 | predicted gene 45754 | 5.2095 | 0.0000 |
| 4 | ENSMUSG00000098879 | Mir7675 | microRNA 7675 | 5.1699 | 0.0000 |
| 5 | ENSMUSG00000100969 | 1700030N03Rik | RIKEN cDNA 1700030N03 gene | 5.1293 | 0.0000 |
| 6 | ENSMUSG00000055725 | Paqr3 | progestin and adipoQ receptor family member III | 5.1159 | 0.0000 |
| 7 | ENSMUSG00000042306 | S100a14 | S100 calcium binding protein A14 | 5.1011 | 0.0000 |
| 8 | ENSMUSG00000060149 | BC002059 | cDNA sequence BC002059 | 5.0444 | 0.0000 |
| 9 | ENSMUSG00000022425 | Enpp2 | ectonucleotide pyrophosphatase/phosphodiesterase 2 | 4.9542 | 0.0000 |
| 10 | ENSMUSG00000045427 | Hnrnph2 | heterogeneous nuclear ribonucleoprotein H2 | 4.9542 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50854 | ENSMUSG00000086841 | 2410006H16Rik | RIKEN cDNA 2410006H16 gene | -4.0875 | 0.0000 |
| 50853 | ENSMUSG00000083841 | Gm1947 | predicted pseudogene 1947 | -4.0875 | 0.1547 |
| 50852 | ENSMUSG00000081163 | Defa-ps12 | defensin, alpha, pseudogene 12 | -4.0875 | 0.1547 |
| 50851 | ENSMUSG00000077422 | Gm24281 | predicted gene, 24281 | -4.0875 | 0.1547 |
| 50850 | ENSMUSG00000070815 | Vmn1r87 | vomeronasal 1 receptor 87 | -4.0875 | 0.1547 |
| 50849 | ENSMUSG00000062874 | Gm4978 | predicted gene 4978 | -4.0875 | 0.0008 |
| 50848 | ENSMUSG00000060699 | Vmn1r35 | vomeronasal 1 receptor 35 | -4.0875 | 0.0008 |
| 50847 | ENSMUSG00000047652 | Pea15b | phosphoprotein enriched in astrocytes 15B | -4.0875 | 0.1547 |
| 50846 | ENSMUSG00000045062 | Pcdhb7 | protocadherin beta 7 | -4.0875 | 0.0008 |
| 50845 | ENSMUSG00000041505 | Gm3402 | predicted gene 3402 | -4.0875 | 0.1547 |
