Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1900056-2

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1900056-2 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP052901	SRP052901_M6	Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinoma	Methylome	Embryonic stem cell	Mouse	Early embryonic tissue	Bisulfite-Seq (RRBS), Trio-seq	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
3	ENSMUSG00000110589	Gm45754	predicted gene 45754	5.2095	0.0000
4	ENSMUSG00000098879	Mir7675	microRNA 7675	5.1699	0.0000
5	ENSMUSG00000100969	1700030N03Rik	RIKEN cDNA 1700030N03 gene	5.1293	0.0000
6	ENSMUSG00000055725	Paqr3	progestin and adipoQ receptor family member III	5.1159	0.0000
7	ENSMUSG00000042306	S100a14	S100 calcium binding protein A14	5.1011	0.0000
8	ENSMUSG00000060149	BC002059	cDNA sequence BC002059	5.0444	0.0000
9	ENSMUSG00000022425	Enpp2	ectonucleotide pyrophosphatase/phosphodiesterase 2	4.9542	0.0000
10	ENSMUSG00000045427	Hnrnph2	heterogeneous nuclear ribonucleoprotein H2	4.9542	0.0000
47072	ENSMUSG00000056537	Rlim	ring finger protein, LIM domain interacting	-2.8816	0.0000
47073	ENSMUSG00000027525	Phactr3	phosphatase and actin regulator 3	-2.8820	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
47081	ENSMUSG00000016664	Pacsin2	protein kinase C and casein kinase substrate in neurons 2	-2.8831	0.0000
47080	ENSMUSG00000042821	Snai1	snail family zinc finger 1	-2.8829	0.0002
47079	ENSMUSG00000020986	Sec23a	SEC23 homolog A, COPII coat complex component	-2.8828	0.0001
47078	ENSMUSG00000086859	Snhg20	small nucleolar RNA host gene 20	-2.8828	0.3508
47077	ENSMUSG00000105676	Gm43403	predicted gene 43403	-2.8827	0.0000
47076	ENSMUSG00000107197	Gm43312	predicted gene 43312	-2.8823	0.0000
47075	ENSMUSG00000044150	Bclaf3	Bclaf1 and Thrap3 family member 3	-2.8823	0.0000
47074	ENSMUSG00000073394	Runx2os1	runt related transcription factor 2, opposite strand 1	-2.8823	0.0000
47073	ENSMUSG00000027525	Phactr3	phosphatase and actin regulator 3	-2.8820	0.0000
47072	ENSMUSG00000056537	Rlim	ring finger protein, LIM domain interacting	-2.8816	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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