Human Omics database for
the Generation of iPS and Normal Cells
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All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM1900056-2
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1900056-2
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP052901
SRP052901_M6
Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinoma
Methylome
Embryonic stem cell
Mouse
Early embryonic tissue
Bisulfite-Seq (RRBS), Trio-seq
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
3
ENSMUSG00000110589
Gm45754
predicted gene 45754
5.2095
0.0000
4
ENSMUSG00000098879
Mir7675
microRNA 7675
5.1699
0.0000
5
ENSMUSG00000100969
1700030N03Rik
RIKEN cDNA 1700030N03 gene
5.1293
0.0000
6
ENSMUSG00000055725
Paqr3
progestin and adipoQ receptor family member III
5.1159
0.0000
7
ENSMUSG00000042306
S100a14
S100 calcium binding protein A14
5.1011
0.0000
8
ENSMUSG00000060149
BC002059
cDNA sequence BC002059
5.0444
0.0000
9
ENSMUSG00000022425
Enpp2
ectonucleotide pyrophosphatase/phosphodiesterase 2
4.9542
0.0000
10
ENSMUSG00000045427
Hnrnph2
heterogeneous nuclear ribonucleoprotein H2
4.9542
0.0000
47072
ENSMUSG00000056537
Rlim
ring finger protein, LIM domain interacting
-2.8816
0.0000
47073
ENSMUSG00000027525
Phactr3
phosphatase and actin regulator 3
-2.8820
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000016664
Pacsin2
protein kinase C and casein kinase substrate in neurons 2
-2.8831
0.0000
47080
ENSMUSG00000042821
Snai1
snail family zinc finger 1
-2.8829
0.0002
47079
ENSMUSG00000020986
Sec23a
SEC23 homolog A, COPII coat complex component
-2.8828
0.0001
47078
ENSMUSG00000086859
Snhg20
small nucleolar RNA host gene 20
-2.8828
0.3508
47077
ENSMUSG00000105676
Gm43403
predicted gene 43403
-2.8827
0.0000
47076
ENSMUSG00000107197
Gm43312
predicted gene 43312
-2.8823
0.0000
47075
ENSMUSG00000044150
Bclaf3
Bclaf1 and Thrap3 family member 3
-2.8823
0.0000
47074
ENSMUSG00000073394
Runx2os1
runt related transcription factor 2, opposite strand 1
-2.8823
0.0000
47073
ENSMUSG00000027525
Phactr3
phosphatase and actin regulator 3
-2.8820
0.0000
47072
ENSMUSG00000056537
Rlim
ring finger protein, LIM domain interacting
-2.8816
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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