SHOGoiN Cell Methylome: GSM1900056-2

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900056-2


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M6Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000095446 Gm25730 predicted gene, 25730 5.2479 0.0000
2 ENSMUSG00000106138 Gm44392 predicted gene, 44392 5.2095 0.0000
3 ENSMUSG00000110589 Gm45754 predicted gene 45754 5.2095 0.0000
4 ENSMUSG00000098879 Mir7675 microRNA 7675 5.1699 0.0000
5 ENSMUSG00000100969 1700030N03Rik RIKEN cDNA 1700030N03 gene 5.1293 0.0000
6 ENSMUSG00000055725 Paqr3 progestin and adipoQ receptor family member III 5.1159 0.0000
7 ENSMUSG00000042306 S100a14 S100 calcium binding protein A14 5.1011 0.0000
8 ENSMUSG00000060149 BC002059 cDNA sequence BC002059 5.0444 0.0000
9 ENSMUSG00000022425 Enpp2 ectonucleotide pyrophosphatase/phosphodiesterase 2 4.9542 0.0000
10 ENSMUSG00000045427 Hnrnph2 heterogeneous nuclear ribonucleoprotein H2 4.9542 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000086841 2410006H16Rik RIKEN cDNA 2410006H16 gene -4.0875 0.0000
50853 ENSMUSG00000083841 Gm1947 predicted pseudogene 1947 -4.0875 0.1547
50852 ENSMUSG00000081163 Defa-ps12 defensin, alpha, pseudogene 12 -4.0875 0.1547
50851 ENSMUSG00000077422 Gm24281 predicted gene, 24281 -4.0875 0.1547
50850 ENSMUSG00000070815 Vmn1r87 vomeronasal 1 receptor 87 -4.0875 0.1547
50849 ENSMUSG00000062874 Gm4978 predicted gene 4978 -4.0875 0.0008
50848 ENSMUSG00000060699 Vmn1r35 vomeronasal 1 receptor 35 -4.0875 0.0008
50847 ENSMUSG00000047652 Pea15b phosphoprotein enriched in astrocytes 15B -4.0875 0.1547
50846 ENSMUSG00000045062 Pcdhb7 protocadherin beta 7 -4.0875 0.0008
50845 ENSMUSG00000041505 Gm3402 predicted gene 3402 -4.0875 0.1547

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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