SHOGoiN Cell Methylome: GSM1900056-2
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1900056-2 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP052901 | SRP052901_M6 | Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinoma | Methylome | Embryonic stem cell | Mouse | Early embryonic tissue | Bisulfite-Seq (RRBS), Trio-seq | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000095446 | Gm25730 | predicted gene, 25730 | 5.2479 | 0.0000 |
| 2 | ENSMUSG00000106138 | Gm44392 | predicted gene, 44392 | 5.2095 | 0.0000 |
| 3 | ENSMUSG00000110589 | Gm45754 | predicted gene 45754 | 5.2095 | 0.0000 |
| 4 | ENSMUSG00000098879 | Mir7675 | microRNA 7675 | 5.1699 | 0.0000 |
| 5 | ENSMUSG00000100969 | 1700030N03Rik | RIKEN cDNA 1700030N03 gene | 5.1293 | 0.0000 |
| 6 | ENSMUSG00000055725 | Paqr3 | progestin and adipoQ receptor family member III | 5.1159 | 0.0000 |
| 7 | ENSMUSG00000042306 | S100a14 | Protein S100-A14 | 5.1011 | 0.0000 |
| 8 | ENSMUSG00000060149 | BC002059 | cDNA sequence BC002059 | 5.0444 | 0.0000 |
| 9 | ENSMUSG00000022425 | Enpp2 | Ectonucleotide pyrophosphatase/phosphodiesterase family member 2 | 4.9542 | 0.0000 |
| 10 | ENSMUSG00000045427 | Hnrnph2 | Heteroous nuclear ribonucleoprotein H2 Heteroous nuclear ribonucleoprotein H2, N-terminally processed | 4.9542 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50998 | ENSMUSG00000098696 | Gm27617 | predicted gene, 27617 | -4.3219 | 0.1007 |
| 50997 | ENSMUSG00000090641 | Zfp712 | NA | -4.3219 | 0.0000 |
| 50996 | ENSMUSG00000088563 | Gm23779 | predicted gene, 23779 | -4.3219 | 0.0001 |
| 50995 | ENSMUSG00000088040 | Gm23329 | predicted gene, 23329 | -4.3219 | 0.1007 |
| 50994 | ENSMUSG00000087550 | Gm14343 | predicted gene 14343 | -4.3219 | 0.0001 |
| 50993 | ENSMUSG00000086822 | 5330413P13Rik | RIKEN cDNA 5330413P13 gene | -4.3219 | 0.0028 |
| 50992 | ENSMUSG00000084637 | n-R5s14 | nuclear encoded rRNA 5S 14 | -4.3219 | 0.0000 |
| 50991 | ENSMUSG00000083469 | Gm14281 | predicted gene 14281 | -4.3219 | 0.0028 |
| 50990 | ENSMUSG00000083401 | Gm13506 | predicted gene 13506 | -4.3219 | 0.0028 |
| 50989 | ENSMUSG00000077998 | Mir466f-2 | microRNA 466f-2 | -4.3219 | 0.0001 |
