SHOGoiN Cell Methylome: GSM1900058-2
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1900058-2 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP052901 | SRP052901_M8 | Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinoma | Methylome | Embryonic stem cell | Mouse | Early embryonic tissue | Bisulfite-Seq (RRBS), Trio-seq | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000105558 | Gm5855 | predicted gene 5855 | 6.2668 | 0.0000 |
| 2 | ENSMUSG00000106095 | 2010110G14Rik | RIKEN cDNA 2010110G14 gene | 6.2668 | 0.0000 |
| 3 | ENSMUSG00000087538 | Gm16341 | predicted gene 16341 | 6.1293 | 0.0000 |
| 4 | ENSMUSG00000080242 | Atp6v0c-ps2 | ATPase, H+ transporting, lysosomal V0 subunit C, pseudogene 2 | 6.1189 | 0.0000 |
| 5 | ENSMUSG00000112364 | 4930503E24Rik | RIKEN cDNA 4930503E24 gene | 5.9069 | 0.0000 |
| 6 | ENSMUSG00000109688 | Gm34597 | predicted gene, 34597 | 5.7279 | 0.0000 |
| 7 | ENSMUSG00000072844 | G530011O06Rik | RIKEN cDNA G530011O06 gene | 5.6724 | 0.0000 |
| 8 | ENSMUSG00000096215 | Smim22 | small integral membrane protein 22 | 5.6439 | 0.0000 |
| 9 | ENSMUSG00000106967 | Gm42477 | predicted gene 42477 | 5.6439 | 0.0000 |
| 10 | ENSMUSG00000109890 | AU023762 | expressed sequence AU023762 | 5.5546 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50854 | ENSMUSG00000076533 | Igkv4-90 | immunoglobulin kappa chain variable 4-90 | -4.9885 | 0.0000 |
| 50853 | ENSMUSG00000036574 | Tex44 | testis expressed 44 | -4.9857 | 0.0000 |
| 50852 | ENSMUSG00000098561 | Gtpbp4-ps5 | GTP binding protein 4, pseudogene 5 | -4.9847 | 0.0000 |
| 50851 | ENSMUSG00000080575 | Mir1190 | microRNA 1190 | -4.9847 | 0.0000 |
| 50850 | ENSMUSG00000049097 | Ankrd34a | ankyrin repeat domain 34A | -4.9823 | 0.0000 |
| 50849 | ENSMUSG00000106279 | Gm47287 | predicted gene, 47287 | -4.9820 | 0.0000 |
| 50848 | ENSMUSG00000105788 | Gm47295 | predicted gene, 47295 | -4.9820 | 0.0000 |
| 50847 | ENSMUSG00000099021 | Rn7s1 | 7S RNA 1 | -4.9820 | 0.0000 |
| 50846 | ENSMUSG00000034892 | Rps29 | ribosomal protein S29 | -4.9820 | 0.0000 |
| 50845 | ENSMUSG00000094443 | Sgo2b | shugoshin 2B | -4.9805 | 0.0000 |
