SHOGoiN Cell Methylome: GSM1900058-2

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900058-2


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M8Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105558 Gm5855 predicted gene 5855 6.2668 0.0000
2 ENSMUSG00000106095 2010110G14Rik RIKEN cDNA 2010110G14 gene 6.2668 0.0000
3 ENSMUSG00000087538 Gm16341 predicted gene 16341 6.1293 0.0000
4 ENSMUSG00000080242 Atp6v0c-ps2 ATPase, H+ transporting, lysosomal V0 subunit C, pseudogene 2 6.1189 0.0000
5 ENSMUSG00000112364 4930503E24Rik RIKEN cDNA 4930503E24 gene 5.9069 0.0000
6 ENSMUSG00000109688 Gm34597 predicted gene, 34597 5.7279 0.0000
7 ENSMUSG00000072844 G530011O06Rik RIKEN cDNA G530011O06 gene 5.6724 0.0000
8 ENSMUSG00000096215 Smim22 small integral membrane protein 22 5.6439 0.0000
9 ENSMUSG00000106967 Gm42477 predicted gene 42477 5.6439 0.0000
10 ENSMUSG00000109890 AU023762 expressed sequence AU023762 5.5546 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000076533 Igkv4-90 immunoglobulin kappa chain variable 4-90 -4.9885 0.0000
50853 ENSMUSG00000036574 Tex44 testis expressed 44 -4.9857 0.0000
50852 ENSMUSG00000098561 Gtpbp4-ps5 GTP binding protein 4, pseudogene 5 -4.9847 0.0000
50851 ENSMUSG00000080575 Mir1190 microRNA 1190 -4.9847 0.0000
50850 ENSMUSG00000049097 Ankrd34a ankyrin repeat domain 34A -4.9823 0.0000
50849 ENSMUSG00000106279 Gm47287 predicted gene, 47287 -4.9820 0.0000
50848 ENSMUSG00000105788 Gm47295 predicted gene, 47295 -4.9820 0.0000
50847 ENSMUSG00000099021 Rn7s1 7S RNA 1 -4.9820 0.0000
50846 ENSMUSG00000034892 Rps29 ribosomal protein S29 -4.9820 0.0000
50845 ENSMUSG00000094443 Sgo2b shugoshin 2B -4.9805 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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