Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1900058-2

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1900058-2 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP052901	SRP052901_M8	Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinoma	Methylome	Embryonic stem cell	Mouse	Early embryonic tissue	Bisulfite-Seq (RRBS), Trio-seq	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSMUSG00000105558	Gm5855	predicted gene 5855	6.2668	0.0000
2	ENSMUSG00000106095	2010110G14Rik	RIKEN cDNA 2010110G14 gene	6.2668	0.0000
3	ENSMUSG00000087538	Gm16341	predicted gene 16341	6.1293	0.0000
4	ENSMUSG00000080242	Atp6v0c-ps2	ATPase, H+ transporting, lysosomal V0 subunit C, pseudogene 2	6.1189	0.0000
5	ENSMUSG00000112364	4930503E24Rik	RIKEN cDNA 4930503E24 gene	5.9069	0.0000
6	ENSMUSG00000109688	Gm34597	predicted gene, 34597	5.7279	0.0000
7	ENSMUSG00000072844	G530011O06Rik	RIKEN cDNA G530011O06 gene	5.6724	0.0000
8	ENSMUSG00000096215	Smim22	small integral membrane protein 22	5.6439	0.0000
9	ENSMUSG00000106967	Gm42477	predicted gene 42477	5.6439	0.0000
10	ENSMUSG00000109890	AU023762	expressed sequence AU023762	5.5546	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
47081	ENSMUSG00000069920	B3gnt9	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9	-3.5325	0.0000
47080	ENSMUSG00000110326	Gm45378	predicted gene 45378	-3.5322	0.0000
47079	ENSMUSG00000071103	1700029J07Rik	RIKEN cDNA 1700029J07 gene	-3.5317	0.7433
47078	ENSMUSG00000106086	Lef1os1	LEF1 opposite strand RNA 1	-3.5309	0.0000
47077	ENSMUSG00000020300	Cpeb4	cytoplasmic polyadenylation element binding protein 4	-3.5306	0.0000
47076	ENSMUSG00000050368	Hoxd10	homeobox D10	-3.5302	0.0000
47075	ENSMUSG00000022788	Fgd4	FYVE, RhoGEF and PH domain containing 4	-3.5300	0.0000
47074	ENSMUSG00000084822	Myadml2os	myeloid-associated differentiation marker-like 2, opposite strand	-3.5298	0.0000
47073	ENSMUSG00000025141	Myadml2	myeloid-associated differentiation marker-like 2	-3.5298	0.0000
47072	ENSMUSG00000026736	4930426L09Rik	RIKEN cDNA 4930426L09 gene	-3.5293	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

Now loading...