SHOGoiN Cell Methylome: GSM1900058-2
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1900058-2 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP052901 | SRP052901_M8 | Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinoma | Methylome | Embryonic stem cell | Mouse | Early embryonic tissue | Bisulfite-Seq (RRBS), Trio-seq | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000105558 | Gm5855 | predicted gene 5855 | 6.2668 | 0.0000 |
| 2 | ENSMUSG00000106095 | 2010110G14Rik | RIKEN cDNA 2010110G14 gene | 6.2668 | 0.0000 |
| 3 | ENSMUSG00000087538 | Gm16341 | predicted gene 16341 | 6.1293 | 0.0000 |
| 4 | ENSMUSG00000080242 | Gm15487 | NA | 6.1189 | 0.0000 |
| 5 | ENSMUSG00000112364 | 4930503E24Rik | RIKEN cDNA 4930503E24 gene | 5.9069 | 0.0000 |
| 6 | ENSMUSG00000109688 | Gm34597 | predicted gene, 34597 | 5.7279 | 0.0000 |
| 7 | ENSMUSG00000072844 | G530011O06Rik | RIKEN cDNA G530011O06 gene | 5.6724 | 0.0000 |
| 8 | ENSMUSG00000096215 | Smim22 | small integral membrane protein 22 | 5.6439 | 0.0000 |
| 9 | ENSMUSG00000106967 | Gm42477 | predicted gene 42477 | 5.6439 | 0.0000 |
| 10 | ENSMUSG00000109890 | AU023762 | expressed sequence AU023762 | 5.5546 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50998 | ENSMUSG00000096182 | Gm23308 | predicted gene, 23308 | -5.1293 | 0.0042 |
| 50997 | ENSMUSG00000088124 | Gm22867 | predicted gene, 22867 | -5.1293 | 0.0042 |
| 50996 | ENSMUSG00000086806 | Gm13054 | predicted gene 13054 | -5.1293 | 0.0042 |
| 50995 | ENSMUSG00000084951 | Mipepos | mitochondrial intermediate peptidase, opposite strand | -5.1293 | 0.0000 |
| 50994 | ENSMUSG00000084437 | Gm23428 | predicted gene, 23428 | -5.1293 | 0.0000 |
| 50993 | ENSMUSG00000078713 | Tomm5 | Mitochondrial import receptor subunit TOM5 homolog | -5.1293 | 0.0042 |
| 50992 | ENSMUSG00000062483 | Vmn1r171 | vomeronasal 1 receptor 171 | -5.1293 | 0.0000 |
| 50991 | ENSMUSG00000041616 | Nppa | natriuretic peptide type A | -5.1293 | 0.0042 |
| 50990 | ENSMUSG00000036743 | Psma8 | Proteasome subunit alpha type-7-like | -5.1293 | 0.0000 |
| 50989 | ENSMUSG00000029727 | Cyp3a13 | Cytochrome P450 3A13 | -5.1293 | 0.0000 |
