Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1900058-2

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900058-2


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M8Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105558 Gm5855 predicted gene 5855 6.2668 0.0000
2 ENSMUSG00000106095 2010110G14Rik RIKEN cDNA 2010110G14 gene 6.2668 0.0000
3 ENSMUSG00000087538 Gm16341 predicted gene 16341 6.1293 0.0000
4 ENSMUSG00000080242 Atp6v0c-ps2 ATPase, H+ transporting, lysosomal V0 subunit C, pseudogene 2 6.1189 0.0000
5 ENSMUSG00000112364 4930503E24Rik RIKEN cDNA 4930503E24 gene 5.9069 0.0000
6 ENSMUSG00000109688 Gm34597 predicted gene, 34597 5.7279 0.0000
7 ENSMUSG00000072844 G530011O06Rik RIKEN cDNA G530011O06 gene 5.6724 0.0000
8 ENSMUSG00000096215 Smim22 small integral membrane protein 22 5.6439 0.0000
9 ENSMUSG00000106967 Gm42477 predicted gene 42477 5.6439 0.0000
10 ENSMUSG00000109890 AU023762 expressed sequence AU023762 5.5546 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000069920 B3gnt9 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9 -3.5325 0.0000
47080 ENSMUSG00000110326 Gm45378 predicted gene 45378 -3.5322 0.0000
47079 ENSMUSG00000071103 1700029J07Rik RIKEN cDNA 1700029J07 gene -3.5317 0.7433
47078 ENSMUSG00000106086 Lef1os1 LEF1 opposite strand RNA 1 -3.5309 0.0000
47077 ENSMUSG00000020300 Cpeb4 cytoplasmic polyadenylation element binding protein 4 -3.5306 0.0000
47076 ENSMUSG00000050368 Hoxd10 homeobox D10 -3.5302 0.0000
47075 ENSMUSG00000022788 Fgd4 FYVE, RhoGEF and PH domain containing 4 -3.5300 0.0000
47074 ENSMUSG00000084822 Myadml2os myeloid-associated differentiation marker-like 2, opposite strand -3.5298 0.0000
47073 ENSMUSG00000025141 Myadml2 myeloid-associated differentiation marker-like 2 -3.5298 0.0000
47072 ENSMUSG00000026736 4930426L09Rik RIKEN cDNA 4930426L09 gene -3.5293 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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