Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM1900058-2
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1900058-2
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP052901
SRP052901_M8
Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinoma
Methylome
Embryonic stem cell
Mouse
Early embryonic tissue
Bisulfite-Seq (RRBS), Trio-seq
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000105558
Gm5855
predicted gene 5855
6.2668
0.0000
2
ENSMUSG00000106095
2010110G14Rik
RIKEN cDNA 2010110G14 gene
6.2668
0.0000
3
ENSMUSG00000087538
Gm16341
predicted gene 16341
6.1293
0.0000
4
ENSMUSG00000080242
Atp6v0c-ps2
ATPase, H+ transporting, lysosomal V0 subunit C, pseudogene 2
6.1189
0.0000
5
ENSMUSG00000112364
4930503E24Rik
RIKEN cDNA 4930503E24 gene
5.9069
0.0000
6
ENSMUSG00000109688
Gm34597
predicted gene, 34597
5.7279
0.0000
7
ENSMUSG00000072844
G530011O06Rik
RIKEN cDNA G530011O06 gene
5.6724
0.0000
8
ENSMUSG00000096215
Smim22
small integral membrane protein 22
5.6439
0.0000
9
ENSMUSG00000106967
Gm42477
predicted gene 42477
5.6439
0.0000
10
ENSMUSG00000109890
AU023762
expressed sequence AU023762
5.5546
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000069920
B3gnt9
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9
-3.5325
0.0000
47080
ENSMUSG00000110326
Gm45378
predicted gene 45378
-3.5322
0.0000
47079
ENSMUSG00000071103
1700029J07Rik
RIKEN cDNA 1700029J07 gene
-3.5317
0.7433
47078
ENSMUSG00000106086
Lef1os1
LEF1 opposite strand RNA 1
-3.5309
0.0000
47077
ENSMUSG00000020300
Cpeb4
cytoplasmic polyadenylation element binding protein 4
-3.5306
0.0000
47076
ENSMUSG00000050368
Hoxd10
homeobox D10
-3.5302
0.0000
47075
ENSMUSG00000022788
Fgd4
FYVE, RhoGEF and PH domain containing 4
-3.5300
0.0000
47074
ENSMUSG00000084822
Myadml2os
myeloid-associated differentiation marker-like 2, opposite strand
-3.5298
0.0000
47073
ENSMUSG00000025141
Myadml2
myeloid-associated differentiation marker-like 2
-3.5298
0.0000
47072
ENSMUSG00000026736
4930426L09Rik
RIKEN cDNA 4930426L09 gene
-3.5293
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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