SHOGoiN Cell Methylome: GSM1900060-1

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900060-1


Profile download
7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M9Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000108258 Gm43913 predicted gene, 43913 7.0875 0.0000
2 ENSMUSG00000098187 Gm8927 predicted gene 8927 6.9069 0.0000
3 ENSMUSG00000076064 Mir690 microRNA 690 6.7841 0.0000
4 ENSMUSG00000080561 Gm26042 predicted gene, 26042 6.7324 0.0000
5 ENSMUSG00000097596 Gm26673 predicted gene, 26673 6.6072 0.0000
6 ENSMUSG00000029191 Rfc1 replication factor C (activator 1) 1 6.5999 0.0000
7 ENSMUSG00000098076 Gm6981 predicted pseudogene 6981 6.5850 0.0000
8 ENSMUSG00000107785 Gm45083 predicted gene 45083 6.5236 0.0000
9 ENSMUSG00000032295 Man2c1 mannosidase, alpha, class 2C, member 1 6.4971 0.0000
10 ENSMUSG00000111850 Gm47829 predicted gene, 47829 6.4971 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000038459 Abhd17c abhydrolase domain containing 17C -5.6745 0.0000
50853 ENSMUSG00000081541 Gm13940 predicted gene 13940 -5.6725 0.0000
50852 ENSMUSG00000106599 Ighv1-73 immunoglobulin heavy variable 1-73 -5.6724 0.0000
50851 ENSMUSG00000105224 Gm3364 predicted gene 3364 -5.6724 0.0000
50850 ENSMUSG00000093338 Mir3090 microRNA 3090 -5.6724 0.0000
50849 ENSMUSG00000090257 Gm4524 predicted gene 4524 -5.6724 0.0000
50848 ENSMUSG00000037577 Ephx3 epoxide hydrolase 3 -5.6724 0.0000
50847 ENSMUSG00000006095 Tbcb tubulin folding cofactor B -5.6724 0.0000
50846 ENSMUSG00000015697 Setdb1 SET domain, bifurcated 1 -5.6677 0.0000
50845 ENSMUSG00000110505 Gm45842 predicted gene 45842 -5.6658 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...