Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1900060-1

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900060-1


Profile download
7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M9Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000108258 Gm43913 predicted gene, 43913 7.0875 0.0000
2 ENSMUSG00000098187 Gm8927 predicted gene 8927 6.9069 0.0000
3 ENSMUSG00000076064 Mir690 microRNA 690 6.7841 0.0000
5 ENSMUSG00000097596 Gm26673 predicted gene, 26673 6.6072 0.0000
6 ENSMUSG00000029191 Rfc1 replication factor C (activator 1) 1 6.5999 0.0000
7 ENSMUSG00000098076 Gm6981 predicted pseudogene 6981 6.5850 0.0000
8 ENSMUSG00000107785 Gm45083 predicted gene 45083 6.5236 0.0000
9 ENSMUSG00000032295 Man2c1 mannosidase, alpha, class 2C, member 1 6.4971 0.0000
10 ENSMUSG00000111850 Gm47829 predicted gene, 47829 6.4971 0.0000
47072 ENSMUSG00000099635 Gm28528 predicted gene 28528 -3.6146 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000028298 Cga glycoprotein hormones, alpha subunit -3.6191 0.0000
47080 ENSMUSG00000067438 Hmx1 H6 homeobox 1 -3.6189 0.0000
47079 ENSMUSG00000044350 Lacc1 laccase domain containing 1 -3.6180 0.0000
47078 ENSMUSG00000034793 G6pc3 glucose 6 phosphatase, catalytic, 3 -3.6180 0.0000
47077 ENSMUSG00000066415 Msl2 MSL complex subunit 2 -3.6179 0.0000
47076 ENSMUSG00000029173 Sepsecs Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase -3.6170 0.0000
47075 ENSMUSG00000043372 Hexim2 hexamethylene bis-acetamide inducible 2 -3.6165 0.0000
47074 ENSMUSG00000108871 Gm45102 predicted gene 45102 -3.6161 0.0000
47073 ENSMUSG00000051518 Rps19bp1 ribosomal protein S19 binding protein 1 -3.6152 0.0000
47072 ENSMUSG00000099635 Gm28528 predicted gene 28528 -3.6146 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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