Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1900060-2

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1900060-2 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP052901	SRP052901_M10	Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinoma	Methylome	Embryonic stem cell	Mouse	Early embryonic tissue	Bisulfite-Seq (RRBS), Trio-seq	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSMUSG00000108258	Gm43913	predicted gene, 43913	6.9887	0.0000
2	ENSMUSG00000072647	Adam1a	a disintegrin and metallopeptidase domain 1a	6.8074	0.0000
3	ENSMUSG00000079029	Eif1ad7	eukaryotic translation initiation factor 1A domain containing 7	6.7615	0.0000
4	ENSMUSG00000097596	Gm26673	predicted gene, 26673	6.7481	0.0000
5	ENSMUSG00000098076	Gm6981	predicted pseudogene 6981	6.5546	0.0000
6	ENSMUSG00000076064	Mir690	microRNA 690	6.5356	0.0000
7	ENSMUSG00000103043	Gm37306	predicted gene, 37306	6.5183	0.0000
8	ENSMUSG00000031848	Lsm4	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	6.5165	0.0000
9	ENSMUSG00000107161	Gm43850	predicted gene 43850	6.4919	0.0000
10	ENSMUSG00000109888	Gm45600	predicted gene 45600	6.4434	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
47081	ENSMUSG00000045327	6330549D23Rik	RIKEN cDNA 6330549D23 gene	-3.6282	0.0000
47080	ENSMUSG00000034040	Galnt17	polypeptide N-acetylgalactosaminyltransferase 17	-3.6281	0.0000
47079	ENSMUSG00000027570	Col9a3	collagen, type IX, alpha 3	-3.6279	0.0000
47078	ENSMUSG00000028341	Nr4a3	nuclear receptor subfamily 4, group A, member 3	-3.6273	0.0000
47077	ENSMUSG00000084856	Gm11528	predicted gene 11528	-3.6262	0.0000
47076	ENSMUSG00000110505	Gm45842	predicted gene 45842	-3.6258	0.0000
47075	ENSMUSG00000021770	Samd8	sterile alpha motif domain containing 8	-3.6252	0.0000
47074	ENSMUSG00000021768	Dusp13	dual specificity phosphatase 13	-3.6252	0.0000
47073	ENSMUSG00000029126	Nsg1	neuron specific gene family member 1	-3.6251	0.0000
47072	ENSMUSG00000029311	Hsd17b11	hydroxysteroid (17-beta) dehydrogenase 11	-3.6250	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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