Human Omics database for
the Generation of iPS and Normal Cells
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All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM1900060-2
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1900060-2
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP052901
SRP052901_M10
Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinoma
Methylome
Embryonic stem cell
Mouse
Early embryonic tissue
Bisulfite-Seq (RRBS), Trio-seq
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000108258
Gm43913
predicted gene, 43913
6.9887
0.0000
2
ENSMUSG00000072647
Adam1a
a disintegrin and metallopeptidase domain 1a
6.8074
0.0000
3
ENSMUSG00000079029
Eif1ad7
eukaryotic translation initiation factor 1A domain containing 7
6.7615
0.0000
4
ENSMUSG00000097596
Gm26673
predicted gene, 26673
6.7481
0.0000
5
ENSMUSG00000098076
Gm6981
predicted pseudogene 6981
6.5546
0.0000
6
ENSMUSG00000076064
Mir690
microRNA 690
6.5356
0.0000
7
ENSMUSG00000103043
Gm37306
predicted gene, 37306
6.5183
0.0000
8
ENSMUSG00000031848
Lsm4
LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated
6.5165
0.0000
9
ENSMUSG00000107161
Gm43850
predicted gene 43850
6.4919
0.0000
10
ENSMUSG00000109888
Gm45600
predicted gene 45600
6.4434
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000045327
6330549D23Rik
RIKEN cDNA 6330549D23 gene
-3.6282
0.0000
47080
ENSMUSG00000034040
Galnt17
polypeptide N-acetylgalactosaminyltransferase 17
-3.6281
0.0000
47079
ENSMUSG00000027570
Col9a3
collagen, type IX, alpha 3
-3.6279
0.0000
47078
ENSMUSG00000028341
Nr4a3
nuclear receptor subfamily 4, group A, member 3
-3.6273
0.0000
47077
ENSMUSG00000084856
Gm11528
predicted gene 11528
-3.6262
0.0000
47076
ENSMUSG00000110505
Gm45842
predicted gene 45842
-3.6258
0.0000
47075
ENSMUSG00000021770
Samd8
sterile alpha motif domain containing 8
-3.6252
0.0000
47074
ENSMUSG00000021768
Dusp13
dual specificity phosphatase 13
-3.6252
0.0000
47073
ENSMUSG00000029126
Nsg1
neuron specific gene family member 1
-3.6251
0.0000
47072
ENSMUSG00000029311
Hsd17b11
hydroxysteroid (17-beta) dehydrogenase 11
-3.6250
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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