Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1900060-2

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900060-2


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M10Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000108258 Gm43913 predicted gene, 43913 6.9887 0.0000
2 ENSMUSG00000072647 Adam1a a disintegrin and metallopeptidase domain 1a 6.8074 0.0000
3 ENSMUSG00000079029 Eif1ad7 eukaryotic translation initiation factor 1A domain containing 7 6.7615 0.0000
4 ENSMUSG00000097596 Gm26673 predicted gene, 26673 6.7481 0.0000
5 ENSMUSG00000098076 Gm6981 predicted pseudogene 6981 6.5546 0.0000
6 ENSMUSG00000076064 Mir690 microRNA 690 6.5356 0.0000
7 ENSMUSG00000103043 Gm37306 predicted gene, 37306 6.5183 0.0000
8 ENSMUSG00000031848 Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated 6.5165 0.0000
9 ENSMUSG00000107161 Gm43850 predicted gene 43850 6.4919 0.0000
10 ENSMUSG00000109888 Gm45600 predicted gene 45600 6.4434 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000045327 6330549D23Rik RIKEN cDNA 6330549D23 gene -3.6282 0.0000
47080 ENSMUSG00000034040 Galnt17 polypeptide N-acetylgalactosaminyltransferase 17 -3.6281 0.0000
47079 ENSMUSG00000027570 Col9a3 collagen, type IX, alpha 3 -3.6279 0.0000
47078 ENSMUSG00000028341 Nr4a3 nuclear receptor subfamily 4, group A, member 3 -3.6273 0.0000
47077 ENSMUSG00000084856 Gm11528 predicted gene 11528 -3.6262 0.0000
47076 ENSMUSG00000110505 Gm45842 predicted gene 45842 -3.6258 0.0000
47075 ENSMUSG00000021770 Samd8 sterile alpha motif domain containing 8 -3.6252 0.0000
47074 ENSMUSG00000021768 Dusp13 dual specificity phosphatase 13 -3.6252 0.0000
47073 ENSMUSG00000029126 Nsg1 neuron specific gene family member 1 -3.6251 0.0000
47072 ENSMUSG00000029311 Hsd17b11 hydroxysteroid (17-beta) dehydrogenase 11 -3.6250 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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