SHOGoiN Cell Methylome: GSM1900060-2
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1900060-2 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP052901 | SRP052901_M10 | Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinoma | Methylome | Embryonic stem cell | Mouse | Early embryonic tissue | Bisulfite-Seq (RRBS), Trio-seq | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000108258 | Gm43913 | predicted gene, 43913 | 6.9887 | 0.0000 |
| 2 | ENSMUSG00000072647 | Adam1a | a disintegrin and metallopeptidase domain 1a | 6.8074 | 0.0000 |
| 3 | ENSMUSG00000079029 | Gm5662 | predicted gene 5662 | 6.7615 | 0.0000 |
| 4 | ENSMUSG00000097596 | Gm26673 | predicted gene, 26673 | 6.7481 | 0.0000 |
| 5 | ENSMUSG00000098076 | Gm6981 | predicted pseudogene 6981 | 6.5546 | 0.0000 |
| 6 | ENSMUSG00000076064 | Mir690 | microRNA 690 | 6.5356 | 0.0000 |
| 7 | ENSMUSG00000103043 | Gm37306 | predicted gene, 37306 | 6.5183 | 0.0000 |
| 8 | ENSMUSG00000031848 | Lsm4 | LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated | 6.5165 | 0.0000 |
| 9 | ENSMUSG00000107161 | Gm43850 | predicted gene 43850 | 6.4919 | 0.0000 |
| 10 | ENSMUSG00000109888 | Gm45600 | predicted gene 45600 | 6.4434 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50854 | ENSMUSG00000108678 | Gm44758 | predicted gene 44758 | -5.6969 | 0.0000 |
| 50853 | ENSMUSG00000097618 | Gm26507 | predicted gene, 26507 | -5.6967 | 0.0000 |
| 50852 | ENSMUSG00000027163 | Commd9 | COMM domain containing 9 | -5.6954 | 0.0000 |
| 50851 | ENSMUSG00000086391 | 1700042O10Rik | RIKEN cDNA 1700042O10 gene | -5.6942 | 0.0000 |
| 50850 | ENSMUSG00000055302 | Mrfap1 | Morf4 family associated protein 1 | -5.6941 | 0.0000 |
| 50849 | ENSMUSG00000031596 | Slc7a2 | solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 | -5.6934 | 0.0000 |
| 50848 | ENSMUSG00000022205 | Sub1 | SUB1 homolog, transcriptional regulator | -5.6927 | 0.0000 |
| 50847 | ENSMUSG00000037640 | Zfp60 | zinc finger protein 60 | -5.6913 | 0.0000 |
| 50846 | ENSMUSG00000069539 | Scyl2 | SCY1-like 2 (S. cerevisiae) | -5.6903 | 0.0000 |
| 50845 | ENSMUSG00000110318 | Gm2767 | predicted gene 2767 | -5.6870 | 0.0000 |
