SHOGoiN Cell Methylome: GSM1900060-2

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900060-2


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M10Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000108258 Gm43913 predicted gene, 43913 6.9887 0.0000
2 ENSMUSG00000072647 Adam1a a disintegrin and metallopeptidase domain 1a 6.8074 0.0000
3 ENSMUSG00000079029 Gm5662 predicted gene 5662 6.7615 0.0000
4 ENSMUSG00000097596 Gm26673 predicted gene, 26673 6.7481 0.0000
5 ENSMUSG00000098076 Gm6981 predicted pseudogene 6981 6.5546 0.0000
6 ENSMUSG00000076064 Mir690 microRNA 690 6.5356 0.0000
7 ENSMUSG00000103043 Gm37306 predicted gene, 37306 6.5183 0.0000
8 ENSMUSG00000031848 Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated 6.5165 0.0000
9 ENSMUSG00000107161 Gm43850 predicted gene 43850 6.4919 0.0000
10 ENSMUSG00000109888 Gm45600 predicted gene 45600 6.4434 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000108678 Gm44758 predicted gene 44758 -5.6969 0.0000
50853 ENSMUSG00000097618 Gm26507 predicted gene, 26507 -5.6967 0.0000
50852 ENSMUSG00000027163 Commd9 COMM domain containing 9 -5.6954 0.0000
50851 ENSMUSG00000086391 1700042O10Rik RIKEN cDNA 1700042O10 gene -5.6942 0.0000
50850 ENSMUSG00000055302 Mrfap1 Morf4 family associated protein 1 -5.6941 0.0000
50849 ENSMUSG00000031596 Slc7a2 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 -5.6934 0.0000
50848 ENSMUSG00000022205 Sub1 SUB1 homolog, transcriptional regulator -5.6927 0.0000
50847 ENSMUSG00000037640 Zfp60 zinc finger protein 60 -5.6913 0.0000
50846 ENSMUSG00000069539 Scyl2 SCY1-like 2 (S. cerevisiae) -5.6903 0.0000
50845 ENSMUSG00000110318 Gm2767 predicted gene 2767 -5.6870 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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