SHOGoiN Cell Methylome: GSM1900062-1

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900062-1


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M11Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000111749 Gm47927 predicted gene, 47927 6.9069 0.0000
2 ENSMUSG00000108895 Gm45070 predicted gene 45070 6.8138 0.0000
3 ENSMUSG00000035818 Plekhs1 pleckstrin homology domain containing, family S member 1 6.7415 0.0000
4 ENSMUSG00000020547 Bzw2 basic leucine zipper and W2 domains 2 6.6724 0.0000
5 ENSMUSG00000036188 Ankmy2 ankyrin repeat and MYND domain containing 2 6.6724 0.0000
6 ENSMUSG00000042306 S100a14 S100 calcium binding protein A14 6.5546 0.0000
7 ENSMUSG00000044957 Pp2d1 protein phosphatase 2C-like domain containing 1 6.4919 0.0000
8 ENSMUSG00000111960 Gm46349 predicted gene, 46349 6.4260 0.0000
9 ENSMUSG00000084361 Gm8202 predicted gene 8202 6.3576 0.0000
10 ENSMUSG00000102689 Gm37217 predicted gene, 37217 6.3531 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000083485 Gm12308 predicted gene 12308 -5.7800 0.0000
50853 ENSMUSG00000083300 Gm12309 predicted gene 12309 -5.7800 0.0000
50852 ENSMUSG00000025133 Ints4 integrator complex subunit 4 -5.7792 0.0000
50851 ENSMUSG00000040795 Iqcc IQ motif containing C -5.7702 0.0000
50850 ENSMUSG00000064563 Snora7a small nucleolar RNA, H/ACA box 7A -5.7681 0.0000
50849 ENSMUSG00000020641 Rsad2 radical S-adenosyl methionine domain containing 2 -5.7637 0.0000
50848 ENSMUSG00000085277 Gm13943 predicted gene 13943 -5.7586 0.0000
50847 ENSMUSG00000093975 Vmn2r-ps19 vomeronasal 2, receptor, pseudogene 19 -5.7549 0.0001
50846 ENSMUSG00000082248 Gm13161 predicted gene 13161 -5.7549 0.0001
50845 ENSMUSG00000065362 Gm24411 predicted gene, 24411 -5.7549 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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