Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1900062-1

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900062-1


Profile download
7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M11Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000111749 Gm47927 predicted gene, 47927 6.9069 0.0000
2 ENSMUSG00000108895 Gm45070 predicted gene 45070 6.8138 0.0000
3 ENSMUSG00000035818 Plekhs1 pleckstrin homology domain containing, family S member 1 6.7415 0.0000
4 ENSMUSG00000020547 Bzw2 basic leucine zipper and W2 domains 2 6.6724 0.0000
5 ENSMUSG00000036188 Ankmy2 ankyrin repeat and MYND domain containing 2 6.6724 0.0000
6 ENSMUSG00000042306 S100a14 S100 calcium binding protein A14 6.5546 0.0000
7 ENSMUSG00000044957 Pp2d1 protein phosphatase 2C-like domain containing 1 6.4919 0.0000
8 ENSMUSG00000111960 Gm46349 predicted gene, 46349 6.4260 0.0000
9 ENSMUSG00000084361 Gm8202 predicted gene 8202 6.3576 0.0000
10 ENSMUSG00000102689 Gm37217 predicted gene, 37217 6.3531 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000031311 Nono non-POU-domain-containing, octamer binding protein -4.0548 0.0000
47080 ENSMUSG00000097735 D930032P07Rik RIKEN cDNA D930032P07 gene -4.0540 0.0000
47079 ENSMUSG00000074039 4930520O04Rik RIKEN cDNA 4930520O04 gene -4.0540 0.0000
47078 ENSMUSG00000020477 Mrps24 mitochondrial ribosomal protein S24 -4.0535 0.0000
47077 ENSMUSG00000052997 Uba2 ubiquitin-like modifier activating enzyme 2 -4.0527 0.0000
47076 ENSMUSG00000098388 Mir8109 microRNA 8109 -4.0525 0.0000
47075 ENSMUSG00000036902 Neto2 neuropilin (NRP) and tolloid (TLL)-like 2 -4.0525 0.0000
47074 ENSMUSG00000083885 Gm13213 predicted gene 13213 -4.0509 0.0027
47073 ENSMUSG00000071711 Mpst mercaptopyruvate sulfurtransferase -4.0507 0.0000
47072 ENSMUSG00000034259 Exosc4 exosome component 4 -4.0497 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...