SHOGoiN Cell Methylome: GSM1900062-2

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900062-2


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M12Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000072844 G530011O06Rik RIKEN cDNA G530011O06 gene 6.7944 0.0000
2 ENSMUSG00000111749 Gm47927 predicted gene, 47927 6.6724 0.0000
3 ENSMUSG00000109754 Gm39214 predicted gene, 39214 6.6439 0.0000
4 ENSMUSG00000031933 Izumo1r IZUMO1 receptor, JUNO 6.5392 0.0000
5 ENSMUSG00000041477 Dcp1b decapping mRNA 1B 6.5236 0.0000
6 ENSMUSG00000108739 Gm45096 predicted gene 45096 6.5157 0.0000
7 ENSMUSG00000082255 Gm11822 predicted gene 11822 6.3399 0.0000
8 ENSMUSG00000085401 Slc39a1-ps solute carrier family 39 (zinc transporter), member 1, pseudogene 6.3219 0.0000
9 ENSMUSG00000103353 Gm37597 predicted gene, 37597 6.3219 0.0000
10 ENSMUSG00000107307 Gm42935 predicted gene 42935 6.2988 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000029416 Slc15a4 solute carrier family 15, member 4 -5.8037 0.0000
50853 ENSMUSG00000078442 Ccdc105 coiled-coil domain containing 105 -5.7987 0.0000
50852 ENSMUSG00000071332 E230015B07Rik RIKEN cDNA E230015B07 gene -5.7977 0.0000
50851 ENSMUSG00000030051 Aplf aprataxin and PNKP like factor -5.7977 0.0000
50850 ENSMUSG00000026750 Psmb7 proteasome (prosome, macropain) subunit, beta type 7 -5.7969 0.0000
50849 ENSMUSG00000073758 Sh3d21 SH3 domain containing 21 -5.7966 0.0000
50848 ENSMUSG00000051977 Prdm9 PR domain containing 9 -5.7961 0.0000
50847 ENSMUSG00000070002 Ell elongation factor RNA polymerase II -5.7954 0.0000
50846 ENSMUSG00000085085 1700086P04Rik RIKEN cDNA 1700086P04 gene -5.7953 0.0000
50845 ENSMUSG00000105355 Gm40117 predicted gene, 40117 -5.7944 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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