SHOGoiN Cell Methylome: GSM1900062-2
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1900062-2 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP052901 | SRP052901_M12 | Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinoma | Methylome | Embryonic stem cell | Mouse | Early embryonic tissue | Bisulfite-Seq (RRBS), Trio-seq | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000072844 | G530011O06Rik | RIKEN cDNA G530011O06 gene | 6.7944 | 0.0000 |
| 2 | ENSMUSG00000111749 | Gm47927 | predicted gene, 47927 | 6.6724 | 0.0000 |
| 3 | ENSMUSG00000109754 | Gm39214 | predicted gene, 39214 | 6.6439 | 0.0000 |
| 4 | ENSMUSG00000031933 | Izumo1r | IZUMO1 receptor, JUNO | 6.5392 | 0.0000 |
| 5 | ENSMUSG00000041477 | Dcp1b | decapping mRNA 1B | 6.5236 | 0.0000 |
| 6 | ENSMUSG00000108739 | Gm45096 | predicted gene 45096 | 6.5157 | 0.0000 |
| 7 | ENSMUSG00000082255 | Gm11822 | predicted gene 11822 | 6.3399 | 0.0000 |
| 8 | ENSMUSG00000085401 | Slc39a1-ps | solute carrier family 39 (zinc transporter), member 1, pseudogene | 6.3219 | 0.0000 |
| 9 | ENSMUSG00000103353 | Gm37597 | predicted gene, 37597 | 6.3219 | 0.0000 |
| 10 | ENSMUSG00000107307 | Gm42935 | predicted gene 42935 | 6.2988 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50854 | ENSMUSG00000029416 | Slc15a4 | solute carrier family 15, member 4 | -5.8037 | 0.0000 |
| 50853 | ENSMUSG00000078442 | Ccdc105 | coiled-coil domain containing 105 | -5.7987 | 0.0000 |
| 50852 | ENSMUSG00000071332 | E230015B07Rik | RIKEN cDNA E230015B07 gene | -5.7977 | 0.0000 |
| 50851 | ENSMUSG00000030051 | Aplf | aprataxin and PNKP like factor | -5.7977 | 0.0000 |
| 50850 | ENSMUSG00000026750 | Psmb7 | proteasome (prosome, macropain) subunit, beta type 7 | -5.7969 | 0.0000 |
| 50849 | ENSMUSG00000073758 | Sh3d21 | SH3 domain containing 21 | -5.7966 | 0.0000 |
| 50848 | ENSMUSG00000051977 | Prdm9 | PR domain containing 9 | -5.7961 | 0.0000 |
| 50847 | ENSMUSG00000070002 | Ell | elongation factor RNA polymerase II | -5.7954 | 0.0000 |
| 50846 | ENSMUSG00000085085 | 1700086P04Rik | RIKEN cDNA 1700086P04 gene | -5.7953 | 0.0000 |
| 50845 | ENSMUSG00000105355 | Gm40117 | predicted gene, 40117 | -5.7944 | 0.0000 |
