Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1900062-2

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1900062-2 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP052901	SRP052901_M12	Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinoma	Methylome	Embryonic stem cell	Mouse	Early embryonic tissue	Bisulfite-Seq (RRBS), Trio-seq	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSMUSG00000072844	G530011O06Rik	RIKEN cDNA G530011O06 gene	6.7944	0.0000
2	ENSMUSG00000111749	Gm47927	predicted gene, 47927	6.6724	0.0000
3	ENSMUSG00000109754	Gm39214	predicted gene, 39214	6.6439	0.0000
4	ENSMUSG00000031933	Izumo1r	IZUMO1 receptor, JUNO	6.5392	0.0000
5	ENSMUSG00000041477	Dcp1b	decapping mRNA 1B	6.5236	0.0000
6	ENSMUSG00000108739	Gm45096	predicted gene 45096	6.5157	0.0000
7	ENSMUSG00000082255	Gm11822	predicted gene 11822	6.3399	0.0000
8	ENSMUSG00000085401	Slc39a1-ps	solute carrier family 39 (zinc transporter), member 1, pseudogene	6.3219	0.0000
9	ENSMUSG00000103353	Gm37597	predicted gene, 37597	6.3219	0.0000
10	ENSMUSG00000107307	Gm42935	predicted gene 42935	6.2988	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
47081	ENSMUSG00000018599	Mief2	mitochondrial elongation factor 2	-4.0595	0.0000
47080	ENSMUSG00000107283	Mpv17	MpV17 mitochondrial inner membrane protein	-4.0593	0.0000
47079	ENSMUSG00000058569	Tmed9	transmembrane p24 trafficking protein 9	-4.0583	0.0002
47078	ENSMUSG00000109468	Gm45185	predicted gene 45185	-4.0579	0.0000
47077	ENSMUSG00000035354	Uvrag	UV radiation resistance associated gene	-4.0579	0.0000
47076	ENSMUSG00000023284	Zfp605	zinc finger protein 605	-4.0577	0.0000
47075	ENSMUSG00000091512	Lamtor3	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	-4.0577	0.0000
47074	ENSMUSG00000084033	Gm7645	predicted gene 7645	-4.0577	0.0000
47073	ENSMUSG00000029249	Rest	RE1-silencing transcription factor	-4.0573	0.0000
47072	ENSMUSG00000013160	Atp6v0d1	ATPase, H+ transporting, lysosomal V0 subunit D1	-4.0570	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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