SHOGoiN Cell Methylome: GSM1900062-2
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1900062-2 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP052901 | SRP052901_M12 | Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinoma | Methylome | Embryonic stem cell | Mouse | Early embryonic tissue | Bisulfite-Seq (RRBS), Trio-seq | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000072844 | G530011O06Rik | RIKEN cDNA G530011O06 gene | 6.7944 | 0.0000 |
| 2 | ENSMUSG00000111749 | Gm47927 | predicted gene, 47927 | 6.6724 | 0.0000 |
| 3 | ENSMUSG00000109754 | Gm39214 | predicted gene, 39214 | 6.6439 | 0.0000 |
| 4 | ENSMUSG00000031933 | Izumo1r | IZUMO1 receptor, JUNO | 6.5392 | 0.0000 |
| 5 | ENSMUSG00000041477 | Dcp1b | mRNA-decapping enzyme 1B | 6.5236 | 0.0000 |
| 6 | ENSMUSG00000108739 | Gm45096 | predicted gene 45096 | 6.5157 | 0.0000 |
| 7 | ENSMUSG00000082255 | Gm11822 | predicted gene 11822 | 6.3399 | 0.0000 |
| 8 | ENSMUSG00000085401 | Slc39a1-ps | solute carrier family 39 (zinc transporter), member 1, pseudogene | 6.3219 | 0.0000 |
| 9 | ENSMUSG00000103353 | Gm37597 | predicted gene, 37597 | 6.3219 | 0.0000 |
| 10 | ENSMUSG00000107307 | Gm42935 | predicted gene 42935 | 6.2988 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50998 | ENSMUSG00000069712 | 4930444G20Rik | RIKEN cDNA 4930444G20 gene | -5.9623 | 0.0000 |
| 50997 | ENSMUSG00000024258 | Polr2d | DNA-directed RNA polymerase II subunit RPB4 | -5.9570 | 0.0000 |
| 50996 | ENSMUSG00000081948 | Olfr1191-ps1 | NA | -5.9542 | 0.0000 |
| 50995 | ENSMUSG00000056203 | Tas2r135 | taste receptor, type 2, member 135 | -5.9542 | 0.0000 |
| 50994 | ENSMUSG00000050953 | Gja1 | gap junction protein, alpha 1 | -5.9542 | 0.0000 |
| 50993 | ENSMUSG00000030089 | Slc41a3 | solute carrier family 41, member 3 | -5.9542 | 0.0000 |
| 50992 | ENSMUSG00000038212 | Mfsd14b | Hippocampus abundant transcript-like protein 1 | -5.9495 | 0.0000 |
| 50991 | ENSMUSG00000027679 | Dnajc19 | Mitochondrial import inner membrane translocase subunit TIM14 | -5.9474 | 0.0000 |
| 50990 | ENSMUSG00000045328 | Cenpe | centromere protein E | -5.9437 | 0.0000 |
| 50989 | ENSMUSG00000105238 | Gm44357 | predicted gene, 44357 | -5.9411 | 0.0000 |
