Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1900062-2

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900062-2


Profile download
7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M12Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000072844 G530011O06Rik RIKEN cDNA G530011O06 gene 6.7944 0.0000
2 ENSMUSG00000111749 Gm47927 predicted gene, 47927 6.6724 0.0000
3 ENSMUSG00000109754 Gm39214 predicted gene, 39214 6.6439 0.0000
4 ENSMUSG00000031933 Izumo1r IZUMO1 receptor, JUNO 6.5392 0.0000
5 ENSMUSG00000041477 Dcp1b decapping mRNA 1B 6.5236 0.0000
6 ENSMUSG00000108739 Gm45096 predicted gene 45096 6.5157 0.0000
7 ENSMUSG00000082255 Gm11822 predicted gene 11822 6.3399 0.0000
8 ENSMUSG00000085401 Slc39a1-ps solute carrier family 39 (zinc transporter), member 1, pseudogene 6.3219 0.0000
9 ENSMUSG00000103353 Gm37597 predicted gene, 37597 6.3219 0.0000
10 ENSMUSG00000107307 Gm42935 predicted gene 42935 6.2988 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000018599 Mief2 mitochondrial elongation factor 2 -4.0595 0.0000
47080 ENSMUSG00000107283 Mpv17 MpV17 mitochondrial inner membrane protein -4.0593 0.0000
47079 ENSMUSG00000058569 Tmed9 transmembrane p24 trafficking protein 9 -4.0583 0.0002
47078 ENSMUSG00000109468 Gm45185 predicted gene 45185 -4.0579 0.0000
47077 ENSMUSG00000035354 Uvrag UV radiation resistance associated gene -4.0579 0.0000
47076 ENSMUSG00000023284 Zfp605 zinc finger protein 605 -4.0577 0.0000
47075 ENSMUSG00000091512 Lamtor3 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 -4.0577 0.0000
47074 ENSMUSG00000084033 Gm7645 predicted gene 7645 -4.0577 0.0000
47073 ENSMUSG00000029249 Rest RE1-silencing transcription factor -4.0573 0.0000
47072 ENSMUSG00000013160 Atp6v0d1 ATPase, H+ transporting, lysosomal V0 subunit D1 -4.0570 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...