Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM1900062-2
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1900062-2
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP052901
SRP052901_M12
Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinoma
Methylome
Embryonic stem cell
Mouse
Early embryonic tissue
Bisulfite-Seq (RRBS), Trio-seq
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000072844
G530011O06Rik
RIKEN cDNA G530011O06 gene
6.7944
0.0000
2
ENSMUSG00000111749
Gm47927
predicted gene, 47927
6.6724
0.0000
3
ENSMUSG00000109754
Gm39214
predicted gene, 39214
6.6439
0.0000
4
ENSMUSG00000031933
Izumo1r
IZUMO1 receptor, JUNO
6.5392
0.0000
5
ENSMUSG00000041477
Dcp1b
decapping mRNA 1B
6.5236
0.0000
6
ENSMUSG00000108739
Gm45096
predicted gene 45096
6.5157
0.0000
7
ENSMUSG00000082255
Gm11822
predicted gene 11822
6.3399
0.0000
8
ENSMUSG00000085401
Slc39a1-ps
solute carrier family 39 (zinc transporter), member 1, pseudogene
6.3219
0.0000
9
ENSMUSG00000103353
Gm37597
predicted gene, 37597
6.3219
0.0000
10
ENSMUSG00000107307
Gm42935
predicted gene 42935
6.2988
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000018599
Mief2
mitochondrial elongation factor 2
-4.0595
0.0000
47080
ENSMUSG00000107283
Mpv17
MpV17 mitochondrial inner membrane protein
-4.0593
0.0000
47079
ENSMUSG00000058569
Tmed9
transmembrane p24 trafficking protein 9
-4.0583
0.0002
47078
ENSMUSG00000109468
Gm45185
predicted gene 45185
-4.0579
0.0000
47077
ENSMUSG00000035354
Uvrag
UV radiation resistance associated gene
-4.0579
0.0000
47076
ENSMUSG00000023284
Zfp605
zinc finger protein 605
-4.0577
0.0000
47075
ENSMUSG00000091512
Lamtor3
late endosomal/lysosomal adaptor, MAPK and MTOR activator 3
-4.0577
0.0000
47074
ENSMUSG00000084033
Gm7645
predicted gene 7645
-4.0577
0.0000
47073
ENSMUSG00000029249
Rest
RE1-silencing transcription factor
-4.0573
0.0000
47072
ENSMUSG00000013160
Atp6v0d1
ATPase, H+ transporting, lysosomal V0 subunit D1
-4.0570
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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