SHOGoiN Cell Methylome: GSM1900063-1

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900063-1


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M13Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000027880 Slc25a54 solute carrier family 25, member 54 7.1497 0.0000
2 ENSMUSG00000105638 4930408K08Rik RIKEN cDNA 4930408K08 gene 7.1497 0.0000
3 ENSMUSG00000064429 Gm22747 predicted gene, 22747 6.7549 0.0000
4 ENSMUSG00000089210 Gm23386 predicted gene, 23386 6.7548 0.0000
5 ENSMUSG00000108941 D530014G21Rik RIKEN cDNA D530014G21 gene 6.7415 0.0000
6 ENSMUSG00000109127 Gm31135 predicted gene, 31135 6.7415 0.0000
7 ENSMUSG00000108740 Gm6008 predicted gene 6008 6.7279 0.0000
8 ENSMUSG00000083771 Gm15988 predicted gene 15988 6.7088 0.0000
9 ENSMUSG00000054412 Gm4793 predicted gene 4793 6.6947 0.0000
10 ENSMUSG00000089508 Gm23473 predicted gene, 23473 6.6865 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000103659 Gm32569 predicted gene, 32569 -6.0687 0.0000
50853 ENSMUSG00000085558 4930412C18Rik RIKEN cDNA 4930412C18 gene -6.0678 0.0000
50852 ENSMUSG00000103255 Pcdhac1 protocadherin alpha subfamily C, 1 -6.0664 0.0000
50851 ENSMUSG00000107287 Gm43458 predicted gene 43458 -6.0664 0.0000
50850 ENSMUSG00000111665 A930033M14Rik RIKEN cDNA A930033M14 gene -6.0661 0.0000
50849 ENSMUSG00000073856 Iqck IQ motif containing K -6.0661 0.0000
50848 ENSMUSG00000062619 2310039H08Rik RIKEN cDNA 2310039H08 gene -6.0661 0.0000
50847 ENSMUSG00000058427 Cxcl2 chemokine (C-X-C motif) ligand 2 -6.0661 0.0000
50846 ENSMUSG00000042195 Slc35f2 solute carrier family 35, member F2 -6.0661 0.0000
50845 ENSMUSG00000031292 Cdkl5 cyclin-dependent kinase-like 5 -6.0661 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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