Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1900063-1

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900063-1


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M13Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000027880 Slc25a54 solute carrier family 25, member 54 7.1497 0.0000
2 ENSMUSG00000105638 4930408K08Rik RIKEN cDNA 4930408K08 gene 7.1497 0.0000
3 ENSMUSG00000064429 Gm22747 predicted gene, 22747 6.7549 0.0000
4 ENSMUSG00000089210 Gm23386 predicted gene, 23386 6.7548 0.0000
5 ENSMUSG00000108941 D530014G21Rik RIKEN cDNA D530014G21 gene 6.7415 0.0000
6 ENSMUSG00000109127 Gm31135 predicted gene, 31135 6.7415 0.0000
7 ENSMUSG00000108740 Gm6008 predicted gene 6008 6.7279 0.0000
8 ENSMUSG00000083771 Gm15988 predicted gene 15988 6.7088 0.0000
9 ENSMUSG00000054412 Gm4793 predicted gene 4793 6.6947 0.0000
10 ENSMUSG00000089508 Gm23473 predicted gene, 23473 6.6865 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000085026 Srrm3os serine/arginine repetitive matrix 3, opposite strand -5.8654 0.0000
50599 ENSMUSG00000019880 Rspo3 R-spondin 3 -5.8651 0.0000
50598 ENSMUSG00000021996 Esd esterase D/formylglutathione hydrolase -5.8643 0.0000
50597 ENSMUSG00000028392 Bspry B-box and SPRY domain containing -5.8624 0.0000
50596 ENSMUSG00000026577 Blzf1 basic leucine zipper nuclear factor 1 -5.8584 0.0000
50595 ENSMUSG00000026575 Nme7 NME/NM23 family member 7 -5.8584 0.0000
50594 ENSMUSG00000088139 Gm27343 predicted gene, 27343 -5.8580 0.0000
50593 ENSMUSG00000081214 Rpl35a-ps2 ribosomal protein L35A, pseudogene 2 -5.8580 0.0000
50592 ENSMUSG00000074682 Zcchc3 zinc finger, CCHC domain containing 3 -5.8580 0.0000
50591 ENSMUSG00000055692 Tmem191c transmembrane protein 191C -5.8580 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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