SHOGoiN Cell Methylome: GSM1900063-2

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900063-2


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M14Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000111587 Gm32338 predicted gene, 32338 7.1396 0.0000
2 ENSMUSG00000080524 Gm23879 predicted gene, 23879 6.8662 0.0000
3 ENSMUSG00000086771 1700080G11Rik RIKEN cDNA 1700080G11 gene 6.8629 0.0000
4 ENSMUSG00000094497 Gm8210 predicted pseudogene 8210 6.8418 0.0000
5 ENSMUSG00000026288 Inpp5d inositol polyphosphate-5-phosphatase D 6.7944 0.0000
6 ENSMUSG00000046108 Il17c interleukin 17C 6.7814 0.0000
7 ENSMUSG00000064429 Gm22747 predicted gene, 22747 6.7549 0.0000
8 ENSMUSG00000089105 Gm23115 predicted gene, 23115 6.7549 0.0000
9 ENSMUSG00000109079 Gm44755 predicted gene 44755 6.7515 0.0000
10 ENSMUSG00000088966 Gm22088 predicted gene, 22088 6.7279 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000076432 Ywhaq tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta -6.0713 0.0000
50853 ENSMUSG00000108418 Gm44627 predicted gene 44627 -6.0709 0.0000
50852 ENSMUSG00000022721 Trmt2a TRM2 tRNA methyltransferase 2A -6.0707 0.0000
50851 ENSMUSG00000022718 Dgcr8 DGCR8, microprocessor complex subunit -6.0707 0.0000
50850 ENSMUSG00000005732 Ranbp1 RAN binding protein 1 -6.0707 0.0000
50849 ENSMUSG00000044795 Cyb5d1 cytochrome b5 domain containing 1 -6.0703 0.0000
50848 ENSMUSG00000074228 Gm10645 predicted gene 10645 -6.0661 0.0000
50847 ENSMUSG00000063087 Gm10125 predicted gene 10125 -6.0661 0.0000
50846 ENSMUSG00000048706 Lurap1l leucine rich adaptor protein 1-like -6.0661 0.0000
50845 ENSMUSG00000032744 Heyl hairy/enhancer-of-split related with YRPW motif-like -6.0661 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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