Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1900063-2

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900063-2


Profile download
7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M14Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000111587 Gm32338 predicted gene, 32338 7.1396 0.0000
2 ENSMUSG00000080524 Gm23879 predicted gene, 23879 6.8662 0.0000
4 ENSMUSG00000094497 Gm8210 predicted pseudogene 8210 6.8418 0.0000
5 ENSMUSG00000026288 Inpp5d inositol polyphosphate-5-phosphatase D 6.7944 0.0000
6 ENSMUSG00000046108 Il17c interleukin 17C 6.7814 0.0000
9 ENSMUSG00000109079 Gm44755 predicted gene 44755 6.7515 0.0000
47072 ENSMUSG00000021216 Tubal3 tubulin, alpha-like 3 -3.9314 0.0000
47073 ENSMUSG00000059714 Flot1 flotillin 1 -3.9322 0.0000
47074 ENSMUSG00000046318 Ccbe1 collagen and calcium binding EGF domains 1 -3.9330 0.0894
47075 ENSMUSG00000081360 Gm11718 predicted gene 11718 -3.9330 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000098838 Mir381 microRNA 381 -3.9352 0.0000
47080 ENSMUSG00000076219 Mir487b microRNA 487b -3.9352 0.0000
47079 ENSMUSG00000076063 Mir539 microRNA 539 -3.9352 0.0000
47078 ENSMUSG00000022361 Zhx1 zinc fingers and homeoboxes 1 -3.9351 0.0000
47077 ENSMUSG00000001052 Sec24b Sec24 related gene family, member B (S. cerevisiae) -3.9350 0.0000
47076 ENSMUSG00000035513 Ntng2 netrin G2 -3.9348 0.0000
47075 ENSMUSG00000081360 Gm11718 predicted gene 11718 -3.9330 0.0000
47074 ENSMUSG00000046318 Ccbe1 collagen and calcium binding EGF domains 1 -3.9330 0.0894
47073 ENSMUSG00000059714 Flot1 flotillin 1 -3.9322 0.0000
47072 ENSMUSG00000021216 Tubal3 tubulin, alpha-like 3 -3.9314 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...