SHOGoiN Cell Methylome: GSM1900064-1

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900064-1


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M15Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000021218 Gdi2 guanosine diphosphate (GDP) dissociation inhibitor 2 6.8455 0.0000
2 ENSMUSG00000052861 Dnah6 dynein, axonemal, heavy chain 6 6.7679 0.0000
3 ENSMUSG00000065072 Gm24533 predicted gene, 24533 6.7679 0.0000
4 ENSMUSG00000086601 Rapgef3os1 Rap guanine nucleotide exchange factor (GEF) 3, opposite strand 1 6.6759 0.0000
5 ENSMUSG00000085562 2610028E06Rik RIKEN cDNA 2610028E06 gene 6.6534 0.0000
6 ENSMUSG00000080057 Gm12378 predicted gene 12378 6.6294 0.0000
7 ENSMUSG00000027953 Slc50a1 solute carrier family 50 (sugar transporter), member 1 6.6245 0.0000
8 ENSMUSG00000081168 Gm13730 predicted gene 13730 6.5850 0.0000
9 ENSMUSG00000097505 Gm26540 predicted gene, 26540 6.5850 0.0000
10 ENSMUSG00000035232 Pdk3 pyruvate dehydrogenase kinase, isoenzyme 3 6.5392 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000044629 Cnrip1 cannabinoid receptor interacting protein 1 -6.1293 0.0000
50853 ENSMUSG00000031613 Hpgd hydroxyprostaglandin dehydrogenase 15 (NAD) -6.1293 0.0000
50852 ENSMUSG00000097525 Platr31 pluripotency associated transcript 31 -6.1291 0.0000
50851 ENSMUSG00000084803 5830444B04Rik RIKEN cDNA 5830444B04 gene -6.1280 0.0000
50850 ENSMUSG00000078490 Cfap74 cilia and flagella associated protein 74 -6.1280 0.0000
50848 ENSMUSG00000028578 Caap1 caspase activity and apoptosis inhibitor 1 -6.1267 0.0000
50847 ENSMUSG00000109559 Gm34280 predicted gene, 34280 -6.1267 0.0000
50846 ENSMUSG00000110611 Gm20163 predicted gene, 20163 -6.1251 0.0000
50845 ENSMUSG00000014837 4931428F04Rik RIKEN cDNA 4931428F04 gene -6.1241 0.0000
10 ENSMUSG00000035232 Pdk3 pyruvate dehydrogenase kinase, isoenzyme 3 6.5392 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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