Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1900064-1

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900064-1


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M15Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000021218 Gdi2 guanosine diphosphate (GDP) dissociation inhibitor 2 6.8455 0.0000
2 ENSMUSG00000052861 Dnah6 dynein, axonemal, heavy chain 6 6.7679 0.0000
3 ENSMUSG00000065072 Gm24533 predicted gene, 24533 6.7679 0.0000
4 ENSMUSG00000086601 Rapgef3os1 Rap guanine nucleotide exchange factor (GEF) 3, opposite strand 1 6.6759 0.0000
5 ENSMUSG00000085562 2610028E06Rik RIKEN cDNA 2610028E06 gene 6.6534 0.0000
6 ENSMUSG00000080057 Gm12378 predicted gene 12378 6.6294 0.0000
7 ENSMUSG00000027953 Slc50a1 solute carrier family 50 (sugar transporter), member 1 6.6245 0.0000
8 ENSMUSG00000081168 Gm13730 predicted gene 13730 6.5850 0.0000
10 ENSMUSG00000035232 Pdk3 pyruvate dehydrogenase kinase, isoenzyme 3 6.5392 0.0000
50591 ENSMUSG00000106834 Gm10459 predicted gene 10459 -5.9276 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000086756 Gm14051 predicted gene 14051 -5.9307 0.0000
50599 ENSMUSG00000028106 Rprd2 regulation of nuclear pre-mRNA domain containing 2 -5.9307 0.0000
50598 ENSMUSG00000037466 Tedc1 tubulin epsilon and delta complex 1 -5.9303 0.0000
50597 ENSMUSG00000022723 Crybg3 beta-gamma crystallin domain containing 3 -5.9300 0.0000
50596 ENSMUSG00000040269 Mrps28 mitochondrial ribosomal protein S28 -5.9296 0.0000
50595 ENSMUSG00000019913 Sim1 single-minded family bHLH transcription factor 1 -5.9293 0.0000
50594 ENSMUSG00000037824 Tspan14 tetraspanin 14 -5.9292 0.0000
50593 ENSMUSG00000074826 Gm10767 predicted gene 10767 -5.9282 0.0000
50592 ENSMUSG00000021520 Uqcrb ubiquinol-cytochrome c reductase binding protein -5.9282 0.0000
50591 ENSMUSG00000106834 Gm10459 predicted gene 10459 -5.9276 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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