SHOGoiN Cell Methylome: GSM1900064-2

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900064-2


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M16Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
2 ENSMUSG00000103685 Gm37074 predicted gene, 37074 7.0334 0.0000
3 ENSMUSG00000090657 Gm8114 predicted gene 8114 6.9307 0.0000
4 ENSMUSG00000021460 Auh AU RNA binding protein/enoyl-coenzyme A hydratase 6.7459 0.0000
5 ENSMUSG00000107907 Gm8574 predicted gene 8574 6.6629 0.0000
6 ENSMUSG00000064522 Gm26442 predicted gene, 26442 6.6534 0.0000
7 ENSMUSG00000104189 Gm37822 predicted gene, 37822 6.6534 0.0000
8 ENSMUSG00000041477 Dcp1b decapping mRNA 1B 6.6510 0.0000
9 ENSMUSG00000059159 Gm8129 predicted pseudogene 8129 6.6439 0.0000
10 ENSMUSG00000111704 Gm47379 predicted gene, 47379 6.6294 0.0000
50845 ENSMUSG00000034157 Cipc CLOCK interacting protein, circadian -6.1679 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000096527 Gm6370 predicted gene 6370 -6.1699 0.0000
50853 ENSMUSG00000096344 Gm6408 predicted gene 6408 -6.1699 0.0000
50852 ENSMUSG00000088257 Gm24286 predicted gene, 24286 -6.1699 0.0000
50851 ENSMUSG00000080799 Gm15166 predicted gene 15166 -6.1699 0.0000
50850 ENSMUSG00000069899 Gm12166 predicted gene 12166 -6.1699 0.0000
50849 ENSMUSG00000062556 Scgb1b2 secretoglobin, family 1B, member 2 -6.1699 0.0000
50848 ENSMUSG00000059323 Tonsl tonsoku-like, DNA repair protein -6.1699 0.0000
50847 ENSMUSG00000037940 Inpp4b inositol polyphosphate-4-phosphatase, type II -6.1699 0.0000
50846 ENSMUSG00000021470 Ercc6l2 excision repair cross-complementing rodent repair deficiency, complementation group 6 like 2 -6.1699 0.0000
50845 ENSMUSG00000034157 Cipc CLOCK interacting protein, circadian -6.1679 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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