SHOGoiN Cell Methylome: GSM1900064-2
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1900064-2 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP052901 | SRP052901_M16 | Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinoma | Methylome | Embryonic stem cell | Mouse | Early embryonic tissue | Bisulfite-Seq (RRBS) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 2 | ENSMUSG00000103685 | Gm37074 | predicted gene, 37074 | 7.0334 | 0.0000 |
| 3 | ENSMUSG00000090657 | Gm8114 | predicted gene 8114 | 6.9307 | 0.0000 |
| 4 | ENSMUSG00000021460 | Auh | AU RNA binding methylglutaconyl-CoA hydratase | 6.7459 | 0.0000 |
| 5 | ENSMUSG00000107907 | Gm8574 | predicted gene 8574 | 6.6629 | 0.0000 |
| 6 | ENSMUSG00000064522 | Gm26442 | predicted gene, 26442 | 6.6534 | 0.0000 |
| 7 | ENSMUSG00000104189 | Gm37822 | predicted gene, 37822 | 6.6534 | 0.0000 |
| 8 | ENSMUSG00000041477 | Dcp1b | mRNA-decapping enzyme 1B | 6.6510 | 0.0000 |
| 9 | ENSMUSG00000059159 | Gm8129 | predicted pseudogene 8129 | 6.6439 | 0.0000 |
| 10 | ENSMUSG00000111704 | Gm47379 | predicted gene, 47379 | 6.6294 | 0.0000 |
| 50989 | ENSMUSG00000108016 | Gm8039 | predicted gene 8039 | -6.3038 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50998 | ENSMUSG00000104600 | Dmrt1i | NA | -6.3189 | 0.0000 |
| 50997 | ENSMUSG00000103213 | Gm38289 | predicted gene, 38289 | -6.3183 | 0.0000 |
| 50996 | ENSMUSG00000094942 | Gm3604 | NA | -6.3179 | 0.0000 |
| 50995 | ENSMUSG00000091076 | Vmn2r115 | vomeronasal 2, receptor 115 | -6.3174 | 0.0000 |
| 50994 | ENSMUSG00000087293 | Gm14341 | predicted gene 14341 | -6.3169 | 0.0000 |
| 50993 | ENSMUSG00000027574 | Nkain4 | Sodium/potassium-transporting ATPase subunit beta-1-interacting protein 4 | -6.3169 | 0.0000 |
| 50992 | ENSMUSG00000065301 | Gm23248 | predicted gene, 23248 | -6.3160 | 0.0000 |
| 50991 | ENSMUSG00000108959 | Gm44697 | predicted gene 44697 | -6.3038 | 0.0000 |
| 50990 | ENSMUSG00000108135 | Gm8035 | predicted gene 8035 | -6.3038 | 0.0000 |
| 50989 | ENSMUSG00000108016 | Gm8039 | predicted gene 8039 | -6.3038 | 0.0000 |
