SHOGoiN Cell Methylome: GSM1900064-2
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1900064-2 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP052901 | SRP052901_M16 | Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinoma | Methylome | Embryonic stem cell | Mouse | Early embryonic tissue | Bisulfite-Seq (RRBS) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 2 | ENSMUSG00000103685 | Gm37074 | predicted gene, 37074 | 7.0334 | 0.0000 |
| 3 | ENSMUSG00000090657 | Gm8114 | predicted gene 8114 | 6.9307 | 0.0000 |
| 4 | ENSMUSG00000021460 | Auh | AU RNA binding protein/enoyl-coenzyme A hydratase | 6.7459 | 0.0000 |
| 5 | ENSMUSG00000107907 | Gm8574 | predicted gene 8574 | 6.6629 | 0.0000 |
| 6 | ENSMUSG00000064522 | Gm26442 | predicted gene, 26442 | 6.6534 | 0.0000 |
| 7 | ENSMUSG00000104189 | Gm37822 | predicted gene, 37822 | 6.6534 | 0.0000 |
| 8 | ENSMUSG00000041477 | Dcp1b | decapping mRNA 1B | 6.6510 | 0.0000 |
| 9 | ENSMUSG00000059159 | Gm8129 | predicted pseudogene 8129 | 6.6439 | 0.0000 |
| 10 | ENSMUSG00000111704 | Gm47379 | predicted gene, 47379 | 6.6294 | 0.0000 |
| 50845 | ENSMUSG00000034157 | Cipc | CLOCK interacting protein, circadian | -6.1679 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50854 | ENSMUSG00000096527 | Gm6370 | predicted gene 6370 | -6.1699 | 0.0000 |
| 50853 | ENSMUSG00000096344 | Gm6408 | predicted gene 6408 | -6.1699 | 0.0000 |
| 50852 | ENSMUSG00000088257 | Gm24286 | predicted gene, 24286 | -6.1699 | 0.0000 |
| 50851 | ENSMUSG00000080799 | Gm15166 | predicted gene 15166 | -6.1699 | 0.0000 |
| 50850 | ENSMUSG00000069899 | Gm12166 | predicted gene 12166 | -6.1699 | 0.0000 |
| 50849 | ENSMUSG00000062556 | Scgb1b2 | secretoglobin, family 1B, member 2 | -6.1699 | 0.0000 |
| 50848 | ENSMUSG00000059323 | Tonsl | tonsoku-like, DNA repair protein | -6.1699 | 0.0000 |
| 50847 | ENSMUSG00000037940 | Inpp4b | inositol polyphosphate-4-phosphatase, type II | -6.1699 | 0.0000 |
| 50846 | ENSMUSG00000021470 | Ercc6l2 | excision repair cross-complementing rodent repair deficiency, complementation group 6 like 2 | -6.1699 | 0.0000 |
| 50845 | ENSMUSG00000034157 | Cipc | CLOCK interacting protein, circadian | -6.1679 | 0.0000 |
