Human Omics database for
the Generation of iPS and Normal Cells
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All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM1900064-2
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1900064-2
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP052901
SRP052901_M16
Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinoma
Methylome
Embryonic stem cell
Mouse
Early embryonic tissue
Bisulfite-Seq (RRBS)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
2
ENSMUSG00000103685
Gm37074
predicted gene, 37074
7.0334
0.0000
3
ENSMUSG00000090657
Gm8114
predicted gene 8114
6.9307
0.0000
4
ENSMUSG00000021460
Auh
AU RNA binding protein/enoyl-coenzyme A hydratase
6.7459
0.0000
5
ENSMUSG00000107907
Gm8574
predicted gene 8574
6.6629
0.0000
6
ENSMUSG00000064522
Gm26442
predicted gene, 26442
6.6534
0.0000
7
ENSMUSG00000104189
Gm37822
predicted gene, 37822
6.6534
0.0000
8
ENSMUSG00000041477
Dcp1b
decapping mRNA 1B
6.6510
0.0000
9
ENSMUSG00000059159
Gm8129
predicted pseudogene 8129
6.6439
0.0000
10
ENSMUSG00000111704
Gm47379
predicted gene, 47379
6.6294
0.0000
47072
ENSMUSG00000049532
Sall2
spalt like transcription factor 2
-4.1920
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000024335
Brd2
bromodomain containing 2
-4.1948
0.0000
47080
ENSMUSG00000059689
Zfp637
zinc finger protein 637
-4.1944
0.0000
47079
ENSMUSG00000071655
Ubxn1
UBX domain protein 1
-4.1938
0.0000
47078
ENSMUSG00000073787
Gm10575
predicted gene 10575
-4.1936
0.0000
47077
ENSMUSG00000048200
Cracr2b
calcium release activated channel regulator 2B
-4.1936
0.0000
47076
ENSMUSG00000090370
Gm21989
predicted gene 21989
-4.1935
0.0000
47075
ENSMUSG00000108719
Gm44757
predicted gene 44757
-4.1929
0.0000
47074
ENSMUSG00000015869
Prpsap1
phosphoribosyl pyrophosphate synthetase-associated protein 1
-4.1929
0.0000
47073
ENSMUSG00000035621
Midn
midnolin
-4.1922
0.0000
47072
ENSMUSG00000049532
Sall2
spalt like transcription factor 2
-4.1920
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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