Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2026493

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2026493


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3150201000000000000000-189Sequence Read ArchiveSRP068012SRP068012_M1Simultaneous profiling of transcriptome and DNA methylome from a single cellMethylomeNeuron (Dorsal root ganglion)MouseSpinal cordBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000091481 Gm17154 predicted gene 17154 7.6900 0.0000
2 ENSMUSG00000032750 Gab3 growth factor receptor bound protein 2-associated protein 3 7.6653 0.0000
4 ENSMUSG00000034552 Zswim2 zinc finger SWIM-type containing 2 7.6293 0.0000
5 ENSMUSG00000040537 Adam22 a disintegrin and metallopeptidase domain 22 7.2614 0.0000
6 ENSMUSG00000055069 Rab39 RAB39, member RAS oncogene family 7.2336 0.0000
7 ENSMUSG00000038279 Nop2 NOP2 nucleolar protein 7.1997 0.0000
8 ENSMUSG00000110525 Gm45893 predicted gene 45893 7.1599 0.0000
10 ENSMUSG00000073980 Gm9574 predicted gene 9574 7.1137 0.0000
47072 ENSMUSG00000038290 Smg6 Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans) -3.5238 0.0000
47073 ENSMUSG00000051518 Rps19bp1 ribosomal protein S19 binding protein 1 -3.5243 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000038836 Agbl3 ATP/GTP binding protein-like 3 -3.5276 0.0000
47080 ENSMUSG00000013150 Gfod2 glucose-fructose oxidoreductase domain containing 2 -3.5269 0.0000
47079 ENSMUSG00000045045 Lrfn4 leucine rich repeat and fibronectin type III domain containing 4 -3.5262 0.0000
47078 ENSMUSG00000027864 Ptgfrn prostaglandin F2 receptor negative regulator -3.5260 0.0000
47077 ENSMUSG00000057234 Mettl15 methyltransferase like 15 -3.5256 0.0000
47076 ENSMUSG00000027115 Kif18a kinesin family member 18A -3.5256 0.0000
47075 ENSMUSG00000065130 Gm24457 predicted gene, 24457 -3.5251 0.0000
47074 ENSMUSG00000038990 Cables2 CDK5 and Abl enzyme substrate 2 -3.5251 0.0000
47073 ENSMUSG00000051518 Rps19bp1 ribosomal protein S19 binding protein 1 -3.5243 0.0000
47072 ENSMUSG00000038290 Smg6 Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans) -3.5238 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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