SHOGoiN Cell Methylome: GSM2026493
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2026493 Profile download | 3150201000000000000000-189 | Sequence Read Archive | SRP068012 | SRP068012_M1 | Simultaneous profiling of transcriptome and DNA methylome from a single cell | Methylome | Neuron (Dorsal root ganglion) | Mouse | Spinal cord | Bisulfite-Seq (RRBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000091481 | Gm17154 | predicted gene 17154 | 7.6900 | 0.0000 |
| 2 | ENSMUSG00000032750 | Gab3 | growth factor receptor bound protein 2-associated protein 3 | 7.6653 | 0.0000 |
| 3 | ENSMUSG00000065798 | Gm25518 | predicted gene, 25518 | 7.6294 | 0.0000 |
| 4 | ENSMUSG00000034552 | Zswim2 | zinc finger SWIM-type containing 2 | 7.6293 | 0.0000 |
| 5 | ENSMUSG00000040537 | Adam22 | a disintegrin and metallopeptidase domain 22 | 7.2614 | 0.0000 |
| 6 | ENSMUSG00000055069 | Rab39 | RAB39, member RAS oncogene family | 7.2336 | 0.0000 |
| 7 | ENSMUSG00000038279 | Nop2 | NOP2 nucleolar protein | 7.1997 | 0.0000 |
| 8 | ENSMUSG00000110525 | Gm45893 | predicted gene 45893 | 7.1599 | 0.0000 |
| 9 | ENSMUSG00000088885 | Gm24217 | predicted gene, 24217 | 7.1446 | 0.0000 |
| 10 | ENSMUSG00000073980 | Gm9574 | predicted gene 9574 | 7.1137 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50854 | ENSMUSG00000007570 | Fance | Fanconi anemia, complementation group E | -6.1357 | 0.0000 |
| 50853 | ENSMUSG00000022863 | Btg3 | B cell translocation gene 3 | -6.1340 | 0.0000 |
| 50852 | ENSMUSG00000032845 | Alpk2 | alpha-kinase 2 | -6.1314 | 0.0000 |
| 50851 | ENSMUSG00000036223 | Ska1 | spindle and kinetochore associated complex subunit 1 | -6.1309 | 0.0000 |
| 50850 | ENSMUSG00000024560 | Cxxc1 | CXXC finger 1 (PHD domain) | -6.1309 | 0.0000 |
| 50849 | ENSMUSG00000110282 | B930086L07Rik | RIKEN cDNA B930086L07 gene | -6.1293 | 0.0064 |
| 50848 | ENSMUSG00000021007 | Spata7 | spermatogenesis associated 7 | -6.1293 | 0.0000 |
| 50847 | ENSMUSG00000024617 | Camk2a | calcium/calmodulin-dependent protein kinase II alpha | -6.1250 | 0.0000 |
| 50846 | ENSMUSG00000080006 | Rps19-ps7 | ribosomal protein S19, pseudogene 7 | -6.1159 | 0.0000 |
| 50845 | ENSMUSG00000039033 | Tasp1 | taspase, threonine aspartase 1 | -6.1159 | 0.0000 |
