Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2026493
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2026493
Profile download
3150201000000000000000-189
Sequence Read Archive
SRP068012
SRP068012_M1
Simultaneous profiling of transcriptome and DNA methylome from a single cell
Methylome
Neuron (Dorsal root ganglion)
Mouse
Spinal cord
Bisulfite-Seq (RRBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000091481
Gm17154
predicted gene 17154
7.6900
0.0000
2
ENSMUSG00000032750
Gab3
growth factor receptor bound protein 2-associated protein 3
7.6653
0.0000
4
ENSMUSG00000034552
Zswim2
zinc finger SWIM-type containing 2
7.6293
0.0000
5
ENSMUSG00000040537
Adam22
a disintegrin and metallopeptidase domain 22
7.2614
0.0000
6
ENSMUSG00000055069
Rab39
RAB39, member RAS oncogene family
7.2336
0.0000
7
ENSMUSG00000038279
Nop2
NOP2 nucleolar protein
7.1997
0.0000
8
ENSMUSG00000110525
Gm45893
predicted gene 45893
7.1599
0.0000
10
ENSMUSG00000073980
Gm9574
predicted gene 9574
7.1137
0.0000
47072
ENSMUSG00000038290
Smg6
Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)
-3.5238
0.0000
47073
ENSMUSG00000051518
Rps19bp1
ribosomal protein S19 binding protein 1
-3.5243
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000038836
Agbl3
ATP/GTP binding protein-like 3
-3.5276
0.0000
47080
ENSMUSG00000013150
Gfod2
glucose-fructose oxidoreductase domain containing 2
-3.5269
0.0000
47079
ENSMUSG00000045045
Lrfn4
leucine rich repeat and fibronectin type III domain containing 4
-3.5262
0.0000
47078
ENSMUSG00000027864
Ptgfrn
prostaglandin F2 receptor negative regulator
-3.5260
0.0000
47077
ENSMUSG00000057234
Mettl15
methyltransferase like 15
-3.5256
0.0000
47076
ENSMUSG00000027115
Kif18a
kinesin family member 18A
-3.5256
0.0000
47075
ENSMUSG00000065130
Gm24457
predicted gene, 24457
-3.5251
0.0000
47074
ENSMUSG00000038990
Cables2
CDK5 and Abl enzyme substrate 2
-3.5251
0.0000
47073
ENSMUSG00000051518
Rps19bp1
ribosomal protein S19 binding protein 1
-3.5243
0.0000
47072
ENSMUSG00000038290
Smg6
Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)
-3.5238
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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