Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2026495

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2026495


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3150201000000000000000-189Sequence Read ArchiveSRP068012SRP068012_M3Simultaneous profiling of transcriptome and DNA methylome from a single cellMethylomeNeuron (Dorsal root ganglion)MouseSpinal cordBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000109193 Gm39027 predicted gene, 39027 6.7072 0.0000
2 ENSMUSG00000084757 1700057H15Rik RIKEN cDNA 1700057H15 gene 6.6294 0.0000
4 ENSMUSG00000085284 Gm16189 predicted gene 16189 6.5236 0.0000
5 ENSMUSG00000036185 Sapcd1 suppressor APC domain containing 1 6.4757 0.0000
6 ENSMUSG00000081465 Gm12884 predicted gene 12884 6.4757 0.0000
7 ENSMUSG00000083901 Gm12885 predicted gene 12885 6.4757 0.0000
8 ENSMUSG00000083941 Gm12889 predicted gene 12889 6.4757 0.0000
9 ENSMUSG00000040540 Ctdsp2-ps CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2, pseudogene 6.4739 0.0000
10 ENSMUSG00000100310 Gm19641 predicted gene, 19641 6.4178 0.0000
47072 ENSMUSG00000040771 Oard1 O-acyl-ADP-ribose deacylase 1 -2.6168 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000100747 1700084E18Rik RIKEN cDNA 1700084E18 gene -2.6191 0.0000
47080 ENSMUSG00000099041 Gm28035 predicted gene, 28035 -2.6191 0.0000
47079 ENSMUSG00000042350 Arel1 apoptosis resistant E3 ubiquitin protein ligase 1 -2.6190 0.0677
47078 ENSMUSG00000103663 2900037B21Rik RIKEN cDNA 2900037B21 gene -2.6189 0.0000
47077 ENSMUSG00000021877 Arf4 ADP-ribosylation factor 4 -2.6183 0.0000
47076 ENSMUSG00000070394 Tmem256 transmembrane protein 256 -2.6183 0.1179
47075 ENSMUSG00000046230 Vps13a vacuolar protein sorting 13A -2.6179 0.0000
47074 ENSMUSG00000022422 Dscc1 DNA replication and sister chromatid cohesion 1 -2.6175 0.0596
47073 ENSMUSG00000014349 Ube2z ubiquitin-conjugating enzyme E2Z -2.6169 0.9175
47072 ENSMUSG00000040771 Oard1 O-acyl-ADP-ribose deacylase 1 -2.6168 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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