SHOGoiN Cell Methylome: GSM2026496
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2026496 Profile download | 3150201000000000000000-189 | Sequence Read Archive | SRP068012 | SRP068012_M4 | Simultaneous profiling of transcriptome and DNA methylome from a single cell | Methylome | Neuron (Dorsal root ganglion) | Mouse | Spinal cord | Bisulfite-Seq (RRBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000093052 | Gm24816 | predicted gene, 24816 | 8.1705 | 0.0000 |
| 2 | ENSMUSG00000101102 | Gm28609 | predicted gene 28609 | 7.5774 | 0.0000 |
| 3 | ENSMUSG00000051986 | A530006G24Rik | RIKEN cDNA A530006G24 gene | 7.4936 | 0.0000 |
| 4 | ENSMUSG00000081882 | Gm14294 | predicted gene 14294 | 7.4757 | 0.0000 |
| 5 | ENSMUSG00000100837 | 1700063D05Rik | RIKEN cDNA 1700063D05 gene | 7.3500 | 0.0000 |
| 6 | ENSMUSG00000029507 | Pus1 | pseudouridine synthase 1 | 7.3265 | 0.0000 |
| 7 | ENSMUSG00000097152 | Gm26515 | predicted gene, 26515 | 7.3265 | 0.0000 |
| 8 | ENSMUSG00000031821 | Gins2 | GINS complex subunit 2 (Psf2 homolog) | 7.2972 | 0.0000 |
| 9 | ENSMUSG00000097773 | Gm10614 | predicted gene 10614 | 7.2972 | 0.0000 |
| 10 | ENSMUSG00000110239 | Gm45620 | predicted gene 45620 | 7.2961 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50854 | ENSMUSG00000086674 | Zfp286os | zinc finger protein 286, opposite strand | -5.7341 | 0.0000 |
| 50853 | ENSMUSG00000047342 | Zfp286 | zinc finger protein 286 | -5.7341 | 0.0000 |
| 50852 | ENSMUSG00000036480 | Prss56 | protease, serine 56 | -5.7333 | 0.0000 |
| 50851 | ENSMUSG00000086756 | Gm14051 | predicted gene 14051 | -5.7288 | 0.0000 |
| 50850 | ENSMUSG00000026308 | Klhl30 | kelch-like 30 | -5.7282 | 0.0000 |
| 50849 | ENSMUSG00000039748 | Exo1 | exonuclease 1 | -5.7279 | 0.0000 |
| 50848 | ENSMUSG00000020225 | Tmbim4 | transmembrane BAX inhibitor motif containing 4 | -5.7279 | 0.0000 |
| 50847 | ENSMUSG00000058709 | Egln2 | egl-9 family hypoxia-inducible factor 2 | -5.7274 | 0.0000 |
| 50846 | ENSMUSG00000019782 | Rwdd1 | RWD domain containing 1 | -5.7215 | 0.0000 |
| 50845 | ENSMUSG00000002833 | Hdgfl2 | HDGF like 2 | -5.7212 | 0.1085 |
