Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2026496

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2026496


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3150201000000000000000-189Sequence Read ArchiveSRP068012SRP068012_M4Simultaneous profiling of transcriptome and DNA methylome from a single cellMethylomeNeuron (Dorsal root ganglion)MouseSpinal cordBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
2 ENSMUSG00000101102 Gm28609 predicted gene 28609 7.5774 0.0000
3 ENSMUSG00000051986 A530006G24Rik RIKEN cDNA A530006G24 gene 7.4936 0.0000
4 ENSMUSG00000081882 Gm14294 predicted gene 14294 7.4757 0.0000
5 ENSMUSG00000100837 1700063D05Rik RIKEN cDNA 1700063D05 gene 7.3500 0.0000
6 ENSMUSG00000029507 Pus1 pseudouridine synthase 1 7.3265 0.0000
8 ENSMUSG00000031821 Gins2 GINS complex subunit 2 (Psf2 homolog) 7.2972 0.0000
9 ENSMUSG00000097773 Gm10614 predicted gene 10614 7.2972 0.0000
10 ENSMUSG00000110239 Gm45620 predicted gene 45620 7.2961 0.0000
47072 ENSMUSG00000034928 Rnf44 ring finger protein 44 -2.7315 0.0074
47073 ENSMUSG00000039270 Megf9 multiple EGF-like-domains 9 -2.7319 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000112107 Gm47560 predicted gene, 47560 -2.7371 0.0000
47080 ENSMUSG00000092569 Gm20544 predicted gene 20544 -2.7367 0.0000
47079 ENSMUSG00000042737 Dpm3 dolichyl-phosphate mannosyltransferase polypeptide 3 -2.7364 0.0003
47078 ENSMUSG00000103640 Gm31406 predicted gene, 31406 -2.7361 0.0000
47077 ENSMUSG00000103415 Gm37339 predicted gene, 37339 -2.7344 0.0000
47076 ENSMUSG00000098562 Mir6910 microRNA 6910 -2.7341 0.0000
47075 ENSMUSG00000090860 Gm17134 predicted gene 17134 -2.7341 0.0000
47074 ENSMUSG00000070306 Ccdc153 coiled-coil domain containing 153 -2.7329 0.0000
47073 ENSMUSG00000039270 Megf9 multiple EGF-like-domains 9 -2.7319 0.0000
47072 ENSMUSG00000034928 Rnf44 ring finger protein 44 -2.7315 0.0074

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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