SHOGoiN Cell Methylome: GSM2026497

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2026497


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3150201000000000000000-189Sequence Read ArchiveSRP068012SRP068012_M5Simultaneous profiling of transcriptome and DNA methylome from a single cellMethylomeNeuron (Dorsal root ganglion)MouseSpinal cordBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000043583 4930470P17Rik RIKEN cDNA 4930470P17 gene 8.1898 0.0000
2 ENSMUSG00000081026 Gm11855 predicted gene 11855 8.1370 0.0000
3 ENSMUSG00000094515 Gm24567 predicted gene, 24567 8.1370 0.0000
4 ENSMUSG00000093100 Mir3971 microRNA 3971 7.8138 0.0000
5 ENSMUSG00000065656 Gm23104 predicted gene, 23104 7.8009 0.0000
6 ENSMUSG00000000730 Dnmt3l DNA (cytosine-5-)-methyltransferase 3-like 7.7814 0.0000
7 ENSMUSG00000070280 Slc22a14 solute carrier family 22 (organic cation transporter), member 14 7.7145 0.0000
8 ENSMUSG00000082924 Gm11462 predicted gene 11462 7.7091 0.0000
9 ENSMUSG00000098097 6530403H02Rik RIKEN cDNA 6530403H02 gene 7.7074 0.0000
10 ENSMUSG00000042349 Ikbke inhibitor of kappaB kinase epsilon 7.6935 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000091133 Gm17108 predicted gene 17108 -6.4877 0.0000
50853 ENSMUSG00000019971 Cep290 centrosomal protein 290 -6.4871 0.0000
50852 ENSMUSG00000097194 9330175E14Rik RIKEN cDNA 9330175E14 gene -6.4854 0.0000
50851 ENSMUSG00000026113 Inpp4a inositol polyphosphate-4-phosphatase, type I -6.4827 0.0000
50850 ENSMUSG00000070332 Trim80 tripartite motif-containing 80 -6.4817 0.0000
50849 ENSMUSG00000106362 Gm47279 predicted gene, 47279 -6.4778 0.0000
50848 ENSMUSG00000104767 Gm47277 predicted gene, 47277 -6.4732 0.0000
50847 ENSMUSG00000065817 Gm24698 predicted gene, 24698 -6.4732 0.0000
50846 ENSMUSG00000030882 Dnhd1 dynein heavy chain domain 1 -6.4710 0.0000
50845 ENSMUSG00000085143 Gm11520 predicted gene 11520 -6.4691 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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