Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2026497
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2026497
Profile download
3150201000000000000000-189
Sequence Read Archive
SRP068012
SRP068012_M5
Simultaneous profiling of transcriptome and DNA methylome from a single cell
Methylome
Neuron (Dorsal root ganglion)
Mouse
Spinal cord
Bisulfite-Seq (RRBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000043583
4930470P17Rik
RIKEN cDNA 4930470P17 gene
8.1898
0.0000
2
ENSMUSG00000081026
Gm11855
predicted gene 11855
8.1370
0.0000
4
ENSMUSG00000093100
Mir3971
microRNA 3971
7.8138
0.0000
5
ENSMUSG00000065656
Gm23104
predicted gene, 23104
7.8009
0.0000
6
ENSMUSG00000000730
Dnmt3l
DNA (cytosine-5-)-methyltransferase 3-like
7.7814
0.0000
7
ENSMUSG00000070280
Slc22a14
solute carrier family 22 (organic cation transporter), member 14
7.7145
0.0000
8
ENSMUSG00000082924
Gm11462
predicted gene 11462
7.7091
0.0000
9
ENSMUSG00000098097
6530403H02Rik
RIKEN cDNA 6530403H02 gene
7.7074
0.0000
10
ENSMUSG00000042349
Ikbke
inhibitor of kappaB kinase epsilon
7.6935
0.0000
47072
ENSMUSG00000091890
A830073O21Rik
RIKEN cDNA A830073O21 gene
-3.8599
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000022019
Tdrd3
tudor domain containing 3
-3.8624
0.0000
47080
ENSMUSG00000042229
Rabif
RAB interacting factor
-3.8622
0.0000
47079
ENSMUSG00000022427
Tomm22
translocase of outer mitochondrial membrane 22
-3.8616
0.0000
47078
ENSMUSG00000039697
Ncoa7
nuclear receptor coactivator 7
-3.8616
0.0000
47077
ENSMUSG00000051469
Zfp24
zinc finger protein 24
-3.8616
0.0000
47076
ENSMUSG00000020770
Unk
unkempt family zinc finger
-3.8608
0.0000
47075
ENSMUSG00000020697
Lig3
ligase III, DNA, ATP-dependent
-3.8603
0.0000
47074
ENSMUSG00000020459
Mtif2
mitochondrial translational initiation factor 2
-3.8603
0.0330
47073
ENSMUSG00000030353
Tead4
TEA domain family member 4
-3.8600
0.0000
47072
ENSMUSG00000091890
A830073O21Rik
RIKEN cDNA A830073O21 gene
-3.8599
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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