Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2026497

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2026497


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3150201000000000000000-189Sequence Read ArchiveSRP068012SRP068012_M5Simultaneous profiling of transcriptome and DNA methylome from a single cellMethylomeNeuron (Dorsal root ganglion)MouseSpinal cordBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000043583 4930470P17Rik RIKEN cDNA 4930470P17 gene 8.1898 0.0000
2 ENSMUSG00000081026 Gm11855 predicted gene 11855 8.1370 0.0000
4 ENSMUSG00000093100 Mir3971 microRNA 3971 7.8138 0.0000
5 ENSMUSG00000065656 Gm23104 predicted gene, 23104 7.8009 0.0000
6 ENSMUSG00000000730 Dnmt3l DNA (cytosine-5-)-methyltransferase 3-like 7.7814 0.0000
7 ENSMUSG00000070280 Slc22a14 solute carrier family 22 (organic cation transporter), member 14 7.7145 0.0000
8 ENSMUSG00000082924 Gm11462 predicted gene 11462 7.7091 0.0000
9 ENSMUSG00000098097 6530403H02Rik RIKEN cDNA 6530403H02 gene 7.7074 0.0000
10 ENSMUSG00000042349 Ikbke inhibitor of kappaB kinase epsilon 7.6935 0.0000
47072 ENSMUSG00000091890 A830073O21Rik RIKEN cDNA A830073O21 gene -3.8599 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000022019 Tdrd3 tudor domain containing 3 -3.8624 0.0000
47080 ENSMUSG00000042229 Rabif RAB interacting factor -3.8622 0.0000
47079 ENSMUSG00000022427 Tomm22 translocase of outer mitochondrial membrane 22 -3.8616 0.0000
47078 ENSMUSG00000039697 Ncoa7 nuclear receptor coactivator 7 -3.8616 0.0000
47077 ENSMUSG00000051469 Zfp24 zinc finger protein 24 -3.8616 0.0000
47076 ENSMUSG00000020770 Unk unkempt family zinc finger -3.8608 0.0000
47075 ENSMUSG00000020697 Lig3 ligase III, DNA, ATP-dependent -3.8603 0.0000
47074 ENSMUSG00000020459 Mtif2 mitochondrial translational initiation factor 2 -3.8603 0.0330
47073 ENSMUSG00000030353 Tead4 TEA domain family member 4 -3.8600 0.0000
47072 ENSMUSG00000091890 A830073O21Rik RIKEN cDNA A830073O21 gene -3.8599 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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