SHOGoiN Cell Methylome: GSM2026497
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2026497 Profile download | 3150201000000000000000-189 | Sequence Read Archive | SRP068012 | SRP068012_M5 | Simultaneous profiling of transcriptome and DNA methylome from a single cell | Methylome | Neuron (Dorsal root ganglion) | Mouse | Spinal cord | Bisulfite-Seq (RRBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000043583 | 4930470P17Rik | RIKEN cDNA 4930470P17 gene | 8.1898 | 0.0000 |
| 2 | ENSMUSG00000081026 | Gm11855 | predicted gene 11855 | 8.1370 | 0.0000 |
| 3 | ENSMUSG00000094515 | Gm24567 | predicted gene, 24567 | 8.1370 | 0.0000 |
| 4 | ENSMUSG00000093100 | Mir3971 | microRNA 3971 | 7.8138 | 0.0000 |
| 5 | ENSMUSG00000065656 | Gm23104 | predicted gene, 23104 | 7.8009 | 0.0000 |
| 6 | ENSMUSG00000000730 | Dnmt3l | DNA (cytosine-5-)-methyltransferase 3-like | 7.7814 | 0.0000 |
| 7 | ENSMUSG00000070280 | Slc22a14 | solute carrier family 22 (organic cation transporter), member 14 | 7.7145 | 0.0000 |
| 8 | ENSMUSG00000082924 | Gm11462 | predicted gene 11462 | 7.7091 | 0.0000 |
| 9 | ENSMUSG00000098097 | 6530403H02Rik | RIKEN cDNA 6530403H02 gene | 7.7074 | 0.0000 |
| 10 | ENSMUSG00000042349 | Ikbke | inhibitor of kappaB kinase epsilon | 7.6935 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50854 | ENSMUSG00000091133 | Gm17108 | predicted gene 17108 | -6.4877 | 0.0000 |
| 50853 | ENSMUSG00000019971 | Cep290 | centrosomal protein 290 | -6.4871 | 0.0000 |
| 50852 | ENSMUSG00000097194 | 9330175E14Rik | RIKEN cDNA 9330175E14 gene | -6.4854 | 0.0000 |
| 50851 | ENSMUSG00000026113 | Inpp4a | inositol polyphosphate-4-phosphatase, type I | -6.4827 | 0.0000 |
| 50850 | ENSMUSG00000070332 | Trim80 | tripartite motif-containing 80 | -6.4817 | 0.0000 |
| 50849 | ENSMUSG00000106362 | Gm47279 | predicted gene, 47279 | -6.4778 | 0.0000 |
| 50848 | ENSMUSG00000104767 | Gm47277 | predicted gene, 47277 | -6.4732 | 0.0000 |
| 50847 | ENSMUSG00000065817 | Gm24698 | predicted gene, 24698 | -6.4732 | 0.0000 |
| 50846 | ENSMUSG00000030882 | Dnhd1 | dynein heavy chain domain 1 | -6.4710 | 0.0000 |
| 50845 | ENSMUSG00000085143 | Gm11520 | predicted gene 11520 | -6.4691 | 0.0000 |
