SHOGoiN Cell Methylome: GSM2026498
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2026498 Profile download | 3150201000000000000000-189 | Sequence Read Archive | SRP068012 | SRP068012_M6 | Simultaneous profiling of transcriptome and DNA methylome from a single cell | Methylome | Neuron (Dorsal root ganglion) | Mouse | Spinal cord | Bisulfite-Seq (RRBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000032750 | Gab3 | growth factor receptor bound protein 2-associated protein 3 | 7.6865 | 0.0000 |
| 2 | ENSMUSG00000031549 | Ido2 | indoleamine 2,3-dioxygenase 2 | 7.6366 | 0.0000 |
| 3 | ENSMUSG00000074595 | Wfdc6a | WAP four-disulfide core domain 6A | 7.4978 | 0.0000 |
| 4 | ENSMUSG00000081565 | Rps12-ps5 | ribosomal protein S12, pseudogene 5 | 7.4294 | 0.0000 |
| 5 | ENSMUSG00000101886 | Gm28324 | predicted gene 28324 | 7.4005 | 0.0000 |
| 6 | ENSMUSG00000046721 | Rpl14-ps1 | ribosomal protein L14, pseudogene 1 | 7.3337 | 0.0000 |
| 7 | ENSMUSG00000084466 | Gm22960 | predicted gene, 22960 | 7.3219 | 0.0000 |
| 8 | ENSMUSG00000022546 | Gpt | glutamic pyruvic transaminase, soluble | 7.2761 | 0.0000 |
| 9 | ENSMUSG00000092116 | Gm10320 | predicted pseudogene 10320 | 7.2595 | 0.0000 |
| 10 | ENSMUSG00000045345 | 9530056K15Rik | RIKEN cDNA 9530056K15 gene | 7.1396 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50854 | ENSMUSG00000092774 | Gm26197 | predicted gene, 26197 | -5.9542 | 0.0000 |
| 50853 | ENSMUSG00000026726 | Cubn | cubilin (intrinsic factor-cobalamin receptor) | -5.9542 | 0.0139 |
| 50852 | ENSMUSG00000022015 | Tnfsf11 | tumor necrosis factor (ligand) superfamily, member 11 | -5.9542 | 0.0000 |
| 50851 | ENSMUSG00000021877 | Arf4 | ADP-ribosylation factor 4 | -5.9528 | 0.0000 |
| 50850 | ENSMUSG00000097717 | 1700066J03Rik | RIKEN cDNA 1700066J03 gene | -5.9510 | 0.0000 |
| 50849 | ENSMUSG00000098134 | Rnf113a2 | ring finger protein 113A2 | -5.9498 | 0.0000 |
| 50848 | ENSMUSG00000021236 | Entpd5 | ectonucleoside triphosphate diphosphohydrolase 5 | -5.9498 | 0.0000 |
| 50847 | ENSMUSG00000037544 | Dlgap5 | DLG associated protein 5 | -5.9495 | 0.0000 |
| 50846 | ENSMUSG00000038286 | Bphl | biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen) | -5.9483 | 0.0000 |
| 50845 | ENSMUSG00000025240 | Sacm1l | SAC1 suppressor of actin mutations 1-like (yeast) | -5.9414 | 0.0000 |
