Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2026498

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2026498 Profile download	3150201000000000000000-189	Sequence Read Archive	SRP068012	SRP068012_M6	Simultaneous profiling of transcriptome and DNA methylome from a single cell	Methylome	Neuron (Dorsal root ganglion)	Mouse	Spinal cord	Bisulfite-Seq (RRBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSMUSG00000032750	Gab3	growth factor receptor bound protein 2-associated protein 3	7.6865	0.0000
2	ENSMUSG00000031549	Ido2	indoleamine 2,3-dioxygenase 2	7.6366	0.0000
3	ENSMUSG00000074595	Wfdc6a	WAP four-disulfide core domain 6A	7.4978	0.0000
4	ENSMUSG00000081565	Rps12-ps5	ribosomal protein S12, pseudogene 5	7.4294	0.0000
5	ENSMUSG00000101886	Gm28324	predicted gene 28324	7.4005	0.0000
6	ENSMUSG00000046721	Rpl14-ps1	ribosomal protein L14, pseudogene 1	7.3337	0.0000
7	ENSMUSG00000084466	Gm22960	predicted gene, 22960	7.3219	0.0000
8	ENSMUSG00000022546	Gpt	glutamic pyruvic transaminase, soluble	7.2761	0.0000
9	ENSMUSG00000092116	Gm10320	predicted pseudogene 10320	7.2595	0.0000
10	ENSMUSG00000045345	9530056K15Rik	RIKEN cDNA 9530056K15 gene	7.1396	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
47081	ENSMUSG00000085492	Trmt61b	tRNA methyltransferase 61B	-3.4186	0.0000
47080	ENSMUSG00000041936	Agrn	agrin	-3.4171	0.0000
47079	ENSMUSG00000020566	Atp6v1c2	ATPase, H+ transporting, lysosomal V1 subunit C2	-3.4164	0.0100
47078	ENSMUSG00000027201	Myef2	myelin basic protein expression factor 2, repressor	-3.4155	0.0000
47077	ENSMUSG00000041740	Rnf10	ring finger protein 10	-3.4147	0.0000
47076	ENSMUSG00000017493	Igfbp4	insulin-like growth factor binding protein 4	-3.4135	0.0000
47075	ENSMUSG00000026172	Bcs1l	BCS1-like (yeast)	-3.4131	0.0000
47074	ENSMUSG00000079654	Prrt4	proline-rich transmembrane protein 4	-3.4129	0.0000
47073	ENSMUSG00000003549	Ercc1	excision repair cross-complementing rodent repair deficiency, complementation group 1	-3.4124	0.0000
47072	ENSMUSG00000043085	Tmem82	transmembrane protein 82	-3.4118	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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