Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2026498
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2026498
Profile download
3150201000000000000000-189
Sequence Read Archive
SRP068012
SRP068012_M6
Simultaneous profiling of transcriptome and DNA methylome from a single cell
Methylome
Neuron (Dorsal root ganglion)
Mouse
Spinal cord
Bisulfite-Seq (RRBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000032750
Gab3
growth factor receptor bound protein 2-associated protein 3
7.6865
0.0000
2
ENSMUSG00000031549
Ido2
indoleamine 2,3-dioxygenase 2
7.6366
0.0000
3
ENSMUSG00000074595
Wfdc6a
WAP four-disulfide core domain 6A
7.4978
0.0000
4
ENSMUSG00000081565
Rps12-ps5
ribosomal protein S12, pseudogene 5
7.4294
0.0000
5
ENSMUSG00000101886
Gm28324
predicted gene 28324
7.4005
0.0000
6
ENSMUSG00000046721
Rpl14-ps1
ribosomal protein L14, pseudogene 1
7.3337
0.0000
7
ENSMUSG00000084466
Gm22960
predicted gene, 22960
7.3219
0.0000
8
ENSMUSG00000022546
Gpt
glutamic pyruvic transaminase, soluble
7.2761
0.0000
9
ENSMUSG00000092116
Gm10320
predicted pseudogene 10320
7.2595
0.0000
10
ENSMUSG00000045345
9530056K15Rik
RIKEN cDNA 9530056K15 gene
7.1396
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000085492
Trmt61b
tRNA methyltransferase 61B
-3.4186
0.0000
47080
ENSMUSG00000041936
Agrn
agrin
-3.4171
0.0000
47079
ENSMUSG00000020566
Atp6v1c2
ATPase, H+ transporting, lysosomal V1 subunit C2
-3.4164
0.0100
47078
ENSMUSG00000027201
Myef2
myelin basic protein expression factor 2, repressor
-3.4155
0.0000
47077
ENSMUSG00000041740
Rnf10
ring finger protein 10
-3.4147
0.0000
47076
ENSMUSG00000017493
Igfbp4
insulin-like growth factor binding protein 4
-3.4135
0.0000
47075
ENSMUSG00000026172
Bcs1l
BCS1-like (yeast)
-3.4131
0.0000
47074
ENSMUSG00000079654
Prrt4
proline-rich transmembrane protein 4
-3.4129
0.0000
47073
ENSMUSG00000003549
Ercc1
excision repair cross-complementing rodent repair deficiency, complementation group 1
-3.4124
0.0000
47072
ENSMUSG00000043085
Tmem82
transmembrane protein 82
-3.4118
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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