Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2026498

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2026498


Profile download
3150201000000000000000-189Sequence Read ArchiveSRP068012SRP068012_M6Simultaneous profiling of transcriptome and DNA methylome from a single cellMethylomeNeuron (Dorsal root ganglion)MouseSpinal cordBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000032750 Gab3 growth factor receptor bound protein 2-associated protein 3 7.6865 0.0000
2 ENSMUSG00000031549 Ido2 indoleamine 2,3-dioxygenase 2 7.6366 0.0000
3 ENSMUSG00000074595 Wfdc6a WAP four-disulfide core domain 6A 7.4978 0.0000
4 ENSMUSG00000081565 Rps12-ps5 ribosomal protein S12, pseudogene 5 7.4294 0.0000
5 ENSMUSG00000101886 Gm28324 predicted gene 28324 7.4005 0.0000
6 ENSMUSG00000046721 Rpl14-ps1 ribosomal protein L14, pseudogene 1 7.3337 0.0000
7 ENSMUSG00000084466 Gm22960 predicted gene, 22960 7.3219 0.0000
8 ENSMUSG00000022546 Gpt glutamic pyruvic transaminase, soluble 7.2761 0.0000
9 ENSMUSG00000092116 Gm10320 predicted pseudogene 10320 7.2595 0.0000
10 ENSMUSG00000045345 9530056K15Rik RIKEN cDNA 9530056K15 gene 7.1396 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000085492 Trmt61b tRNA methyltransferase 61B -3.4186 0.0000
47080 ENSMUSG00000041936 Agrn agrin -3.4171 0.0000
47079 ENSMUSG00000020566 Atp6v1c2 ATPase, H+ transporting, lysosomal V1 subunit C2 -3.4164 0.0100
47078 ENSMUSG00000027201 Myef2 myelin basic protein expression factor 2, repressor -3.4155 0.0000
47077 ENSMUSG00000041740 Rnf10 ring finger protein 10 -3.4147 0.0000
47076 ENSMUSG00000017493 Igfbp4 insulin-like growth factor binding protein 4 -3.4135 0.0000
47075 ENSMUSG00000026172 Bcs1l BCS1-like (yeast) -3.4131 0.0000
47074 ENSMUSG00000079654 Prrt4 proline-rich transmembrane protein 4 -3.4129 0.0000
47073 ENSMUSG00000003549 Ercc1 excision repair cross-complementing rodent repair deficiency, complementation group 1 -3.4124 0.0000
47072 ENSMUSG00000043085 Tmem82 transmembrane protein 82 -3.4118 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...