Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2026499

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2026499


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3150201000000000000000-189Sequence Read ArchiveSRP068012SRP068012_M7Simultaneous profiling of transcriptome and DNA methylome from a single cellMethylomeNeuron (Dorsal root ganglion)MouseSpinal cordBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105147 Ckb-ps1 creatine kinase, brain, pseudogene 1 8.6958 0.0000
2 ENSMUSG00000105473 Mark1-ps1 MAP/microtubule affinity regulating kinase 1, pseudogene 1 8.6958 0.0000
3 ENSMUSG00000077578 Gm25631 predicted gene, 25631 8.5527 0.0000
4 ENSMUSG00000081565 Rps12-ps5 ribosomal protein S12, pseudogene 5 8.2844 0.0000
5 ENSMUSG00000080441 Mir1249 microRNA 1249 8.0768 0.0000
6 ENSMUSG00000104037 Gm37776 predicted gene, 37776 7.9009 0.0000
7 ENSMUSG00000091955 Gm9844 predicted pseudogene 9844 7.8611 0.0000
8 ENSMUSG00000108302 Gm18207 predicted gene, 18207 7.8611 0.0000
9 ENSMUSG00000023387 Kcnk16 potassium channel, subfamily K, member 16 7.7458 0.0000
10 ENSMUSG00000084918 Gm12708 predicted gene 12708 7.7347 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47080 ENSMUSG00000085026 Srrm3os serine/arginine repetitive matrix 3, opposite strand -4.3078 0.0000
47079 ENSMUSG00000042401 Crtac1 cartilage acidic protein 1 -4.3076 0.9106
47078 ENSMUSG00000046111 Cep295 centrosomal protein 295 -4.3074 0.0000
47077 ENSMUSG00000032374 Plod2 procollagen lysine, 2-oxoglutarate 5-dioxygenase 2 -4.3071 0.0000
47076 ENSMUSG00000034863 Ano8 anoctamin 8 -4.3066 0.0000
47075 ENSMUSG00000021486 Prelid1 PRELI domain containing 1 -4.3065 0.0000
47074 ENSMUSG00000041986 Elmod1 ELMO/CED-12 domain containing 1 -4.3065 0.0000
47073 ENSMUSG00000100396 Gm29367 predicted gene 29367 -4.3065 0.7709
47072 ENSMUSG00000060794 Tssk5 testis-specific serine kinase 5 -4.3065 0.0000
10 ENSMUSG00000084918 Gm12708 predicted gene 12708 7.7347 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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