SHOGoiN Cell Methylome: GSM2026499

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2026499


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3150201000000000000000-189Sequence Read ArchiveSRP068012SRP068012_M7Simultaneous profiling of transcriptome and DNA methylome from a single cellMethylomeNeuron (Dorsal root ganglion)MouseSpinal cordBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105147 Ckb-ps1 creatine kinase, brain, pseudogene 1 8.6958 0.0000
2 ENSMUSG00000105473 Mark1-ps1 MAP/microtubule affinity regulating kinase 1, pseudogene 1 8.6958 0.0000
3 ENSMUSG00000077578 Gm25631 predicted gene, 25631 8.5527 0.0000
4 ENSMUSG00000081565 Rps12-ps5 ribosomal protein S12, pseudogene 5 8.2844 0.0000
5 ENSMUSG00000080441 Mir1249 microRNA 1249 8.0768 0.0000
6 ENSMUSG00000104037 Gm37776 predicted gene, 37776 7.9009 0.0000
7 ENSMUSG00000091955 Gm9844 predicted pseudogene 9844 7.8611 0.0000
8 ENSMUSG00000108302 Gm18207 predicted gene, 18207 7.8611 0.0000
9 ENSMUSG00000023387 Kcnk16 potassium channel, subfamily K, member 16 7.7458 0.0000
10 ENSMUSG00000084918 Gm12708 predicted gene 12708 7.7347 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000021843 Ktn1 kinectin 1 -6.6264 0.0000
50853 ENSMUSG00000109111 6530437J22Rik RIKEN cDNA 6530437J22 gene -6.6262 0.0000
50852 ENSMUSG00000032452 Clstn2 calsyntenin 2 -6.6250 0.0000
50851 ENSMUSG00000099320 Mir7664 microRNA 7664 -6.6234 0.0000
50850 ENSMUSG00000092845 Gm24328 predicted gene, 24328 -6.6234 0.0000
50849 ENSMUSG00000006476 Nsmf NMDA receptor synaptonuclear signaling and neuronal migration factor -6.6234 0.0000
50848 ENSMUSG00000097689 4930471D02Rik RIKEN cDNA 4930471D02 gene -6.6170 0.0000
50847 ENSMUSG00000036112 Metap2 methionine aminopeptidase 2 -6.6170 0.0000
50846 ENSMUSG00000073563 Csnk1g3 casein kinase 1, gamma 3 -6.6147 0.0000
50845 ENSMUSG00000020020 Usp44 ubiquitin specific peptidase 44 -6.6128 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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