SHOGoiN Cell Methylome: GSM2026500
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2026500 Profile download | 3150201000000000000000-189 | Sequence Read Archive | SRP068012 | SRP068012_M8 | Simultaneous profiling of transcriptome and DNA methylome from a single cell | Methylome | Neuron (Dorsal root ganglion) | Mouse | Spinal cord | Bisulfite-Seq (RRBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000021716 | Srek1ip1 | splicing regulatory glutamine/lysine-rich protein 1interacting protein 1 | 9.1972 | 0.0000 |
| 2 | ENSMUSG00000096400 | Gm6098 | predicted gene 6098 | 8.7347 | 0.0000 |
| 3 | ENSMUSG00000029343 | Crybb1 | crystallin, beta B1 | 8.4979 | 0.0000 |
| 4 | ENSMUSG00000066975 | Cryba4 | crystallin, beta A4 | 8.4979 | 0.0000 |
| 5 | ENSMUSG00000086769 | Gm15587 | predicted gene 15587 | 8.4798 | 0.0000 |
| 6 | ENSMUSG00000093759 | Scarletltr | Scarletltr, erythroid developmental long intergenic non-protein coding transcript | 8.4429 | 0.0000 |
| 7 | ENSMUSG00000049410 | Zfp683 | zinc finger protein 683 | 8.4263 | 0.0000 |
| 8 | ENSMUSG00000027006 | Dnajc10 | DnaJ heat shock protein family (Hsp40) member C10 | 8.2761 | 0.0000 |
| 9 | ENSMUSG00000097026 | Gm26786 | predicted gene, 26786 | 8.2312 | 0.0000 |
| 10 | ENSMUSG00000106694 | Gm42894 | predicted gene 42894 | 8.2288 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50854 | ENSMUSG00000025429 | Pstpip2 | proline-serine-threonine phosphatase-interacting protein 2 | -6.8629 | 0.0000 |
| 50853 | ENSMUSG00000097564 | C430014B12Rik | RIKEN cDNA C430014B12 gene | -6.8592 | 0.0000 |
| 50852 | ENSMUSG00000026150 | Mff | mitochondrial fission factor | -6.8592 | 0.0000 |
| 50851 | ENSMUSG00000025917 | Cops5 | COP9 signalosome subunit 5 | -6.8580 | 0.0000 |
| 50850 | ENSMUSG00000034424 | Gcsh | glycine cleavage system protein H (aminomethyl carrier) | -6.8533 | 0.0000 |
| 50849 | ENSMUSG00000067942 | Zfp160 | zinc finger protein 160 | -6.8459 | 0.0000 |
| 50848 | ENSMUSG00000032033 | Barx2 | BarH-like homeobox 2 | -6.8455 | 0.0000 |
| 50847 | ENSMUSG00000099622 | Gm29188 | predicted gene 29188 | -6.8399 | 0.0000 |
| 50846 | ENSMUSG00000066842 | Hmcn1 | hemicentin 1 | -6.8399 | 0.0000 |
| 50845 | ENSMUSG00000100636 | Gm3551 | predicted gene 3551 | -6.8329 | 0.0000 |
