SHOGoiN Cell Methylome: GSM2026500

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2026500


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3150201000000000000000-189Sequence Read ArchiveSRP068012SRP068012_M8Simultaneous profiling of transcriptome and DNA methylome from a single cellMethylomeNeuron (Dorsal root ganglion)MouseSpinal cordBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000021716 Srek1ip1 splicing regulatory glutamine/lysine-rich protein 1interacting protein 1 9.1972 0.0000
2 ENSMUSG00000096400 Gm6098 predicted gene 6098 8.7347 0.0000
3 ENSMUSG00000029343 Crybb1 crystallin, beta B1 8.4979 0.0000
4 ENSMUSG00000066975 Cryba4 crystallin, beta A4 8.4979 0.0000
5 ENSMUSG00000086769 Gm15587 predicted gene 15587 8.4798 0.0000
6 ENSMUSG00000093759 Scarletltr Scarletltr, erythroid developmental long intergenic non-protein coding transcript 8.4429 0.0000
7 ENSMUSG00000049410 Zfp683 zinc finger protein 683 8.4263 0.0000
8 ENSMUSG00000027006 Dnajc10 DnaJ heat shock protein family (Hsp40) member C10 8.2761 0.0000
9 ENSMUSG00000097026 Gm26786 predicted gene, 26786 8.2312 0.0000
10 ENSMUSG00000106694 Gm42894 predicted gene 42894 8.2288 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000025429 Pstpip2 proline-serine-threonine phosphatase-interacting protein 2 -6.8629 0.0000
50853 ENSMUSG00000097564 C430014B12Rik RIKEN cDNA C430014B12 gene -6.8592 0.0000
50852 ENSMUSG00000026150 Mff mitochondrial fission factor -6.8592 0.0000
50851 ENSMUSG00000025917 Cops5 COP9 signalosome subunit 5 -6.8580 0.0000
50850 ENSMUSG00000034424 Gcsh glycine cleavage system protein H (aminomethyl carrier) -6.8533 0.0000
50849 ENSMUSG00000067942 Zfp160 zinc finger protein 160 -6.8459 0.0000
50848 ENSMUSG00000032033 Barx2 BarH-like homeobox 2 -6.8455 0.0000
50847 ENSMUSG00000099622 Gm29188 predicted gene 29188 -6.8399 0.0000
50846 ENSMUSG00000066842 Hmcn1 hemicentin 1 -6.8399 0.0000
50845 ENSMUSG00000100636 Gm3551 predicted gene 3551 -6.8329 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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