Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2026501

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2026501


Profile download
3150201000000000000000-189Sequence Read ArchiveSRP068012SRP068012_M9Simultaneous profiling of transcriptome and DNA methylome from a single cellMethylomeNeuron (Dorsal root ganglion)MouseSpinal cordBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000051900 Abca16 ATP-binding cassette, sub-family A (ABC1), member 16 8.1384 0.0000
2 ENSMUSG00000081465 Gm12884 predicted gene 12884 8.0553 0.0000
3 ENSMUSG00000083901 Gm12885 predicted gene 12885 8.0553 0.0000
4 ENSMUSG00000083941 Gm12889 predicted gene 12889 8.0553 0.0000
6 ENSMUSG00000065532 Mir187 microRNA 187 7.3309 0.0000
7 ENSMUSG00000106994 Gm10829 predicted gene 10829 7.3219 0.0000
8 ENSMUSG00000068680 Gm10248 predicted gene 10248 7.3038 0.0000
9 ENSMUSG00000098248 Gm27222 predicted gene 27222 7.2668 0.0000
10 ENSMUSG00000027107 Chrna1 cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle) 7.1312 0.0000
47072 ENSMUSG00000048603 Gm9828 predicted gene 9828 -3.0230 0.0013

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000020841 Cpd carboxypeptidase D -3.0249 0.0000
47080 ENSMUSG00000036391 Sec24a Sec24 related gene family, member A (S. cerevisiae) -3.0246 0.0000
47079 ENSMUSG00000027478 Dnmt3b DNA methyltransferase 3B -3.0244 0.0001
47078 ENSMUSG00000019797 Mtres1 mitochondrial transcription rescue factor 1 -3.0243 0.0000
47077 ENSMUSG00000028136 Snx27 sorting nexin family member 27 -3.0242 0.0000
47076 ENSMUSG00000030265 Kras Kirsten rat sarcoma viral oncogene homolog -3.0238 0.0000
47075 ENSMUSG00000027340 Slc23a2 solute carrier family 23 (nucleobase transporters), member 2 -3.0237 0.0000
47074 ENSMUSG00000046994 Mars2 methionine-tRNA synthetase 2 (mitochondrial) -3.0234 0.0000
47073 ENSMUSG00000000126 Wnt9a wingless-type MMTV integration site family, member 9A -3.0231 0.0000
47072 ENSMUSG00000048603 Gm9828 predicted gene 9828 -3.0230 0.0013

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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