SHOGoiN Cell Methylome: GSM2026501

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2026501


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3150201000000000000000-189Sequence Read ArchiveSRP068012SRP068012_M9Simultaneous profiling of transcriptome and DNA methylome from a single cellMethylomeNeuron (Dorsal root ganglion)MouseSpinal cordBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000051900 Abca16 ATP-binding cassette, sub-family A (ABC1), member 16 8.1384 0.0000
2 ENSMUSG00000081465 Gm12884 predicted gene 12884 8.0553 0.0000
3 ENSMUSG00000083901 Gm12885 predicted gene 12885 8.0553 0.0000
4 ENSMUSG00000083941 Gm12889 predicted gene 12889 8.0553 0.0000
5 ENSMUSG00000096704 Gm24805 predicted gene, 24805 7.7074 0.0000
6 ENSMUSG00000065532 Mir187 microRNA 187 7.3309 0.0000
7 ENSMUSG00000106994 Gm10829 predicted gene 10829 7.3219 0.0000
8 ENSMUSG00000068680 Gm10248 predicted gene 10248 7.3038 0.0000
9 ENSMUSG00000098248 Gm27222 predicted gene 27222 7.2668 0.0000
10 ENSMUSG00000027107 Chrna1 cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle) 7.1312 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000024805 Pcgf5 polycomb group ring finger 5 -4.6779 0.0000
50853 ENSMUSG00000059920 4930453N24Rik RIKEN cDNA 4930453N24 gene -4.6705 0.0000
50852 ENSMUSG00000022550 Adck5 aarF domain containing kinase 5 -4.6601 0.0000
50851 ENSMUSG00000040102 Klhl42 kelch-like 42 -4.6576 0.0000
50850 ENSMUSG00000049107 Ntf3 neurotrophin 3 -4.6568 0.0000
50849 ENSMUSG00000021803 Cdhr1 cadherin-related family member 1 -4.6539 0.0000
50848 ENSMUSG00000022095 Fam160b2 family with sequence similarity 160, member B2 -4.6525 0.0000
50847 ENSMUSG00000096474 Gm5561 predicted gene 5561 -4.6439 0.0000
50846 ENSMUSG00000083771 Gm15988 predicted gene 15988 -4.6439 0.2564
50845 ENSMUSG00000069270 Hist1h2ac histone cluster 1, H2ac -4.6439 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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