Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2026502
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2026502
Profile download
3150201000000000000000-189
Sequence Read Archive
SRP068012
SRP068012_M10
Simultaneous profiling of transcriptome and DNA methylome from a single cell
Methylome
Neuron (Dorsal root ganglion)
Mouse
Spinal cord
Bisulfite-Seq (RRBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000110239
Gm45620
predicted gene 45620
9.1876
0.0000
2
ENSMUSG00000099764
Rps10-ps2
ribosomal protein S10, pseudogene 2
9.0875
0.0000
3
ENSMUSG00000102082
Gm28675
predicted gene 28675
8.8156
0.0000
4
ENSMUSG00000101102
Gm28609
predicted gene 28609
8.8089
0.0000
5
ENSMUSG00000077591
Gm26016
predicted gene, 26016
8.7266
0.0000
6
ENSMUSG00000056824
Zfp663
zinc finger protein 663
8.6882
0.0000
7
ENSMUSG00000076430
Hus1b
HUS1 checkpoint clamp component B
8.6049
0.0000
8
ENSMUSG00000106739
Gm43499
predicted gene 43499
8.4769
0.0000
9
ENSMUSG00000039934
Gsap
gamma-secretase activating protein
8.3685
0.0000
10
ENSMUSG00000085049
Parvaos
parvin, alpha, opposite strand
8.3405
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000064994
Gm22422
predicted gene, 22422
-4.0173
0.0000
47080
ENSMUSG00000026750
Psmb7
proteasome (prosome, macropain) subunit, beta type 7
-4.0172
0.0000
47079
ENSMUSG00000102909
Gm2453
predicted gene 2453
-4.0169
0.0000
47078
ENSMUSG00000030530
Furin
furin (paired basic amino acid cleaving enzyme)
-4.0168
0.0000
47077
ENSMUSG00000029111
Nelfa
negative elongation factor complex member A, Whsc2
-4.0168
0.0000
47076
ENSMUSG00000070997
1700055D18Rik
RIKEN cDNA 1700055D18 gene
-4.0168
0.0000
47075
ENSMUSG00000049657
Zbtb5
zinc finger and BTB domain containing 5
-4.0168
0.0000
47074
ENSMUSG00000062861
Zfp28
zinc finger protein 28
-4.0167
0.0000
47073
ENSMUSG00000077791
Gm25563
predicted gene, 25563
-4.0167
0.0000
47072
ENSMUSG00000044447
Dock5
dedicator of cytokinesis 5
-4.0166
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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