Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2026503
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2026503
Profile download
3150201000000000000000-189
Sequence Read Archive
SRP068012
SRP068012_M11
Simultaneous profiling of transcriptome and DNA methylome from a single cell
Methylome
Neuron (Dorsal root ganglion)
Mouse
Spinal cord
Bisulfite-Seq (RRBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000110508
Gm8940
predicted gene 8940
8.5736
0.0000
2
ENSMUSG00000025380
Fscn2
fascin actin-bundling protein 2
8.1280
0.0000
3
ENSMUSG00000110662
Gm45722
predicted gene 45722
8.0768
0.0000
4
ENSMUSG00000105518
Gm42674
predicted gene 42674
8.0661
0.0000
5
ENSMUSG00000101729
Gm17796
predicted gene, 17796
8.0444
0.0000
6
ENSMUSG00000000730
Dnmt3l
DNA (cytosine-5-)-methyltransferase 3-like
7.9944
0.0000
7
ENSMUSG00000030737
Slco2b1
solute carrier organic anion transporter family, member 2b1
7.9008
0.0000
8
ENSMUSG00000109559
Gm34280
predicted gene, 34280
7.9008
0.0000
9
ENSMUSG00000050276
Mrgprg
MAS-related GPR, member G
7.8611
0.0000
10
ENSMUSG00000001020
S100a4
S100 calcium binding protein A4
7.8147
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000044024
Rell2
RELT-like 2
-3.8804
0.0000
47080
ENSMUSG00000004187
Kifc2
kinesin family member C2
-3.8800
0.0000
47079
ENSMUSG00000023000
Dhh
desert hedgehog
-3.8791
0.0000
47078
ENSMUSG00000042524
Sun2
Sad1 and UNC84 domain containing 2
-3.8789
0.0000
47077
ENSMUSG00000040093
Bmf
BCL2 modifying factor
-3.8788
0.0000
47076
ENSMUSG00000098474
Mir6919
microRNA 6919
-3.8777
0.0000
47075
ENSMUSG00000090034
Gm15917
predicted gene 15917
-3.8775
0.0000
47074
ENSMUSG00000027575
Arfgap1
ADP-ribosylation factor GTPase activating protein 1
-3.8770
0.0000
47073
ENSMUSG00000065616
Mir375
microRNA 375
-3.8760
0.0000
47072
ENSMUSG00000038618
Rassf7
Ras association (RalGDS/AF-6) domain family (N-terminal) member 7
-3.8756
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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