Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2026504

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2026504


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3150201000000000000000-189Sequence Read ArchiveSRP068012SRP068012_M12Simultaneous profiling of transcriptome and DNA methylome from a single cellMethylomeNeuron (Dorsal root ganglion)MouseSpinal cordBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105775 Gm10290 predicted pseudogene 10290 8.0168 0.0000
2 ENSMUSG00000088478 Mir1946b microRNA 1946b 7.8887 0.0000
3 ENSMUSG00000090381 Gm6158 predicted gene 6158 7.7549 0.0000
4 ENSMUSG00000025497 Cdhr5 cadherin-related family member 5 7.5430 0.0000
5 ENSMUSG00000037820 Tgm2 transglutaminase 2, C polypeptide 7.4696 0.0000
6 ENSMUSG00000108149 Olfr439-ps1 olfactory receptor 439, pseudogene 1 7.4512 0.0000
7 ENSMUSG00000021298 Gpr132 G protein-coupled receptor 132 7.4335 0.0000
8 ENSMUSG00000039934 Gsap gamma-secretase activating protein 7.4094 0.0000
9 ENSMUSG00000107450 Gm2522 predicted gene 2522 7.4094 0.0000
10 ENSMUSG00000102998 Gm37763 predicted gene, 37763 7.3750 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000086541 Has2os hyaluronan synthase 2, opposite strand -4.1912 0.0000
47080 ENSMUSG00000023439 Gnb3 guanine nucleotide binding protein (G protein), beta 3 -4.1909 0.0000
47079 ENSMUSG00000042328 Hps4 HPS4, biogenesis of lysosomal organelles complex 3 subunit 2 -4.1908 0.0001
47078 ENSMUSG00000024206 Rfx2 regulatory factor X, 2 (influences HLA class II expression) -4.1906 0.0110
47077 ENSMUSG00000024883 Rin1 Ras and Rab interactor 1 -4.1895 0.0000
47076 ENSMUSG00000045466 Zfp956 zinc finger protein 956 -4.1895 0.0000
47075 ENSMUSG00000014592 Camta1 calmodulin binding transcription activator 1 -4.1894 0.0000
47074 ENSMUSG00000044576 Garem2 GRB2 associated regulator of MAPK1 subtype 2 -4.1893 0.0000
47073 ENSMUSG00000001039 B9d1 B9 protein domain 1 -4.1891 0.0000
47072 ENSMUSG00000045238 A730035I17Rik RIKEN cDNA A730035I17 gene -4.1891 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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