Human Omics database for
the Generation of iPS and Normal Cells
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All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2026505
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2026505
Profile download
3150201000000000000000-189
Sequence Read Archive
SRP068012
SRP068012_M13
Simultaneous profiling of transcriptome and DNA methylome from a single cell
Methylome
Neuron (Dorsal root ganglion)
Mouse
Spinal cord
Bisulfite-Seq (RRBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000065426
Mir134
microRNA 134
10.0091
0.0000
2
ENSMUSG00000065428
Mir382
microRNA 382
10.0091
0.0000
3
ENSMUSG00000065448
Mir154
microRNA 154
10.0091
0.0000
4
ENSMUSG00000070128
Mir485
microRNA 485
10.0091
0.0000
5
ENSMUSG00000070136
Mir496a
microRNA 496a
10.0091
0.0000
6
ENSMUSG00000077925
Mir453
microRNA 453
10.0091
0.0000
7
ENSMUSG00000099236
Mir668
microRNA 668
10.0091
0.0000
8
ENSMUSG00000089530
Gm25163
predicted gene, 25163
9.6312
0.0000
9
ENSMUSG00000081341
Gm14891
predicted gene 14891
9.3032
0.0000
10
ENSMUSG00000026930
Gpsm1
G-protein signalling modulator 1 (AGS3-like, C. elegans)
9.2071
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000030495
Slc7a10
solute carrier family 7 (cationic amino acid transporter, y+ system), member 10
-4.7411
0.0000
47080
ENSMUSG00000026657
Frmd4a
FERM domain containing 4A
-4.7401
0.0000
47079
ENSMUSG00000040850
Psme4
proteasome (prosome, macropain) activator subunit 4
-4.7399
0.0000
47078
ENSMUSG00000066894
Vsig10
V-set and immunoglobulin domain containing 10
-4.7395
0.0000
47077
ENSMUSG00000033423
Eri3
exoribonuclease 3
-4.7395
0.0000
47076
ENSMUSG00000104943
Gm42868
predicted gene 42868
-4.7392
0.0000
47075
ENSMUSG00000053957
Gm12474
predicted gene 12474
-4.7392
0.0000
47074
ENSMUSG00000044468
Tent5c
terminal nucleotidyltransferase 5C
-4.7392
0.0000
47073
ENSMUSG00000075054
Yae1d1
Yae1 domain containing 1
-4.7389
0.0021
47072
ENSMUSG00000073434
Wdr90
WD repeat domain 90
-4.7384
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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