SHOGoiN Cell Methylome: GSM2026505
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2026505 Profile download | 3150201000000000000000-189 | Sequence Read Archive | SRP068012 | SRP068012_M13 | Simultaneous profiling of transcriptome and DNA methylome from a single cell | Methylome | Neuron (Dorsal root ganglion) | Mouse | Spinal cord | Bisulfite-Seq (RRBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000065426 | Mir134 | microRNA 134 | 10.0091 | 0.0000 |
| 2 | ENSMUSG00000065428 | Mir382 | microRNA 382 | 10.0091 | 0.0000 |
| 3 | ENSMUSG00000065448 | Mir154 | microRNA 154 | 10.0091 | 0.0000 |
| 4 | ENSMUSG00000070128 | Mir485 | microRNA 485 | 10.0091 | 0.0000 |
| 5 | ENSMUSG00000070136 | Mir496a | microRNA 496a | 10.0091 | 0.0000 |
| 6 | ENSMUSG00000077925 | Mir453 | microRNA 453 | 10.0091 | 0.0000 |
| 7 | ENSMUSG00000099236 | Mir668 | microRNA 668 | 10.0091 | 0.0000 |
| 8 | ENSMUSG00000089530 | Gm25163 | predicted gene, 25163 | 9.6312 | 0.0000 |
| 9 | ENSMUSG00000081341 | Gm14891 | predicted gene 14891 | 9.3032 | 0.0000 |
| 10 | ENSMUSG00000026930 | Gpsm1 | G-protein signalling modulator 1 (AGS3-like, C. elegans) | 9.2071 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50854 | ENSMUSG00000029166 | Mapre3 | microtubule-associated protein, RP/EB family, member 3 | -7.8646 | 0.0000 |
| 50853 | ENSMUSG00000094359 | Gm25571 | predicted gene, 25571 | -7.8642 | 0.0000 |
| 50852 | ENSMUSG00000033918 | Parl | presenilin associated, rhomboid-like | -7.8620 | 0.0000 |
| 50851 | ENSMUSG00000021978 | Extl3 | exostoses (multiple)-like 3 | -7.8586 | 0.0000 |
| 50850 | ENSMUSG00000097324 | Carmn | cardiac mesoderm enhancer-associated non-coding RNA | -7.8580 | 0.0000 |
| 50849 | ENSMUSG00000068452 | Duox2 | dual oxidase 2 | -7.8517 | 0.0000 |
| 50848 | ENSMUSG00000027225 | Duoxa2 | dual oxidase maturation factor 2 | -7.8517 | 0.0000 |
| 50847 | ENSMUSG00000105609 | Gm42501 | predicted gene 42501 | -7.8509 | 0.0000 |
| 50846 | ENSMUSG00000019832 | Rab32 | RAB32, member RAS oncogene family | -7.8502 | 0.0000 |
| 50845 | ENSMUSG00000027288 | Zfp106 | zinc finger protein 106 | -7.8497 | 0.0000 |
