Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2026505

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2026505 Profile download	3150201000000000000000-189	Sequence Read Archive	SRP068012	SRP068012_M13	Simultaneous profiling of transcriptome and DNA methylome from a single cell	Methylome	Neuron (Dorsal root ganglion)	Mouse	Spinal cord	Bisulfite-Seq (RRBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSMUSG00000065426	Mir134	microRNA 134	10.0091	0.0000
2	ENSMUSG00000065428	Mir382	microRNA 382	10.0091	0.0000
3	ENSMUSG00000065448	Mir154	microRNA 154	10.0091	0.0000
4	ENSMUSG00000070128	Mir485	microRNA 485	10.0091	0.0000
5	ENSMUSG00000070136	Mir496a	microRNA 496a	10.0091	0.0000
6	ENSMUSG00000077925	Mir453	microRNA 453	10.0091	0.0000
7	ENSMUSG00000099236	Mir668	microRNA 668	10.0091	0.0000
8	ENSMUSG00000089530	Gm25163	predicted gene, 25163	9.6312	0.0000
9	ENSMUSG00000081341	Gm14891	predicted gene 14891	9.3032	0.0000
10	ENSMUSG00000026930	Gpsm1	G-protein signalling modulator 1 (AGS3-like, C. elegans)	9.2071	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
47081	ENSMUSG00000030495	Slc7a10	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	-4.7411	0.0000
47080	ENSMUSG00000026657	Frmd4a	FERM domain containing 4A	-4.7401	0.0000
47079	ENSMUSG00000040850	Psme4	proteasome (prosome, macropain) activator subunit 4	-4.7399	0.0000
47078	ENSMUSG00000066894	Vsig10	V-set and immunoglobulin domain containing 10	-4.7395	0.0000
47077	ENSMUSG00000033423	Eri3	exoribonuclease 3	-4.7395	0.0000
47076	ENSMUSG00000104943	Gm42868	predicted gene 42868	-4.7392	0.0000
47075	ENSMUSG00000053957	Gm12474	predicted gene 12474	-4.7392	0.0000
47074	ENSMUSG00000044468	Tent5c	terminal nucleotidyltransferase 5C	-4.7392	0.0000
47073	ENSMUSG00000075054	Yae1d1	Yae1 domain containing 1	-4.7389	0.0021
47072	ENSMUSG00000073434	Wdr90	WD repeat domain 90	-4.7384	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

Now loading...