SHOGoiN Cell Methylome: GSM2026506

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2026506


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3150201000000000000000-189Sequence Read ArchiveSRP068012SRP068012_M14Simultaneous profiling of transcriptome and DNA methylome from a single cellMethylomeNeuron (Dorsal root ganglion)MouseSpinal cordBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000084574 n-R5s198 nuclear encoded rRNA 5S 198 7.9248 0.0000
2 ENSMUSG00000087647 Gm15407 predicted gene 15407 7.6795 0.0000
3 ENSMUSG00000029204 Rhoh ras homolog family member H 7.6724 0.0000
4 ENSMUSG00000106681 Gm43004 predicted gene 43004 7.6724 0.0000
5 ENSMUSG00000106776 Gm42646 predicted gene 42646 7.6724 0.0000
6 ENSMUSG00000048981 Krt31 keratin 31 7.6511 0.0000
7 ENSMUSG00000087581 Gm11571 predicted gene 11571 7.6511 0.0000
8 ENSMUSG00000024440 Pcdh12 protocadherin 12 7.5392 0.0000
9 ENSMUSG00000089530 Gm25163 predicted gene, 25163 7.4724 0.0000
10 ENSMUSG00000020383 Il13 interleukin 13 7.3765 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000025915 Sgk3 serum/glucocorticoid regulated kinase 3 -6.5829 0.0000
50853 ENSMUSG00000086890 1700021J08Rik RIKEN cDNA 1700021J08 gene -6.5824 0.0000
50852 ENSMUSG00000046861 Hectd3 HECT domain E3 ubiquitin protein ligase 3 -6.5824 0.0000
50851 ENSMUSG00000109326 Gm9165 predicted gene 9165 -6.5822 0.0000
50850 ENSMUSG00000028273 Pdlim5 PDZ and LIM domain 5 -6.5795 0.0000
50849 ENSMUSG00000097038 Gm26821 predicted gene, 26821 -6.5732 0.0000
50848 ENSMUSG00000028351 Brinp1 bone morphogenic protein/retinoic acid inducible neural specific 1 -6.5699 0.0001
50847 ENSMUSG00000024068 Spast spastin -6.5699 0.0000
50846 ENSMUSG00000021963 Sap18 Sin3-associated polypeptide 18 -6.5699 0.0000
50845 ENSMUSG00000022016 Akap11 A kinase (PRKA) anchor protein 11 -6.5655 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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