Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2026507

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2026507


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3150201000000000000000-189Sequence Read ArchiveSRP068012SRP068012_M15Simultaneous profiling of transcriptome and DNA methylome from a single cellMethylomeNeuron (Dorsal root ganglion)MouseSpinal cordBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000081465 Gm12884 predicted gene 12884 6.7549 0.0000
2 ENSMUSG00000083901 Gm12885 predicted gene 12885 6.7549 0.0000
3 ENSMUSG00000083941 Gm12889 predicted gene 12889 6.7549 0.0000
4 ENSMUSG00000020609 Apob apolipoprotein B 5.9069 0.0000
5 ENSMUSG00000020098 Pcbd1 pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1 5.8826 0.0000
6 ENSMUSG00000093406 Rpl48-ps1 ribosomal protein L48, pseudogene 1 5.5850 0.0000
7 ENSMUSG00000082170 Gm8617 predicted gene 8617 5.5546 0.0000
8 ENSMUSG00000082281 Gm4886 predicted gene 4886 5.5546 0.0000
9 ENSMUSG00000100837 1700063D05Rik RIKEN cDNA 1700063D05 gene 5.4263 0.0000
10 ENSMUSG00000029414 Kntc1 kinetochore associated 1 5.2854 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000104178 Gm9916 predicted gene 9916 -2.9435 0.0003
47079 ENSMUSG00000028832 Stmn1 stathmin 1 -2.9435 0.0000
47078 ENSMUSG00000023952 Gtpbp2 GTP binding protein 2 -2.9429 0.0000
47077 ENSMUSG00000112411 Gm19337 predicted gene, 19337 -2.9424 0.0000
47076 ENSMUSG00000020064 Herc4 hect domain and RLD 4 -2.9424 0.0000
47075 ENSMUSG00000028528 Dnajc6 DnaJ heat shock protein family (Hsp40) member C6 -2.9422 0.0025
47074 ENSMUSG00000056708 Ier5 immediate early response 5 -2.9419 0.0000
47073 ENSMUSG00000073794 I0C0044D17Rik RIKEN cDNA I0C0044D17 gene -2.9410 0.0000
47072 ENSMUSG00000091537 Tma7 translational machinery associated 7 -2.9410 0.0000
10 ENSMUSG00000029414 Kntc1 kinetochore associated 1 5.2854 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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