Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2026507
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2026507
Profile download
3150201000000000000000-189
Sequence Read Archive
SRP068012
SRP068012_M15
Simultaneous profiling of transcriptome and DNA methylome from a single cell
Methylome
Neuron (Dorsal root ganglion)
Mouse
Spinal cord
Bisulfite-Seq (RRBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000081465
Gm12884
predicted gene 12884
6.7549
0.0000
2
ENSMUSG00000083901
Gm12885
predicted gene 12885
6.7549
0.0000
3
ENSMUSG00000083941
Gm12889
predicted gene 12889
6.7549
0.0000
4
ENSMUSG00000020609
Apob
apolipoprotein B
5.9069
0.0000
5
ENSMUSG00000020098
Pcbd1
pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1
5.8826
0.0000
6
ENSMUSG00000093406
Rpl48-ps1
ribosomal protein L48, pseudogene 1
5.5850
0.0000
7
ENSMUSG00000082170
Gm8617
predicted gene 8617
5.5546
0.0000
8
ENSMUSG00000082281
Gm4886
predicted gene 4886
5.5546
0.0000
9
ENSMUSG00000100837
1700063D05Rik
RIKEN cDNA 1700063D05 gene
5.4263
0.0000
10
ENSMUSG00000029414
Kntc1
kinetochore associated 1
5.2854
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000104178
Gm9916
predicted gene 9916
-2.9435
0.0003
47079
ENSMUSG00000028832
Stmn1
stathmin 1
-2.9435
0.0000
47078
ENSMUSG00000023952
Gtpbp2
GTP binding protein 2
-2.9429
0.0000
47077
ENSMUSG00000112411
Gm19337
predicted gene, 19337
-2.9424
0.0000
47076
ENSMUSG00000020064
Herc4
hect domain and RLD 4
-2.9424
0.0000
47075
ENSMUSG00000028528
Dnajc6
DnaJ heat shock protein family (Hsp40) member C6
-2.9422
0.0025
47074
ENSMUSG00000056708
Ier5
immediate early response 5
-2.9419
0.0000
47073
ENSMUSG00000073794
I0C0044D17Rik
RIKEN cDNA I0C0044D17 gene
-2.9410
0.0000
47072
ENSMUSG00000091537
Tma7
translational machinery associated 7
-2.9410
0.0000
10
ENSMUSG00000029414
Kntc1
kinetochore associated 1
5.2854
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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