SHOGoiN Cell Methylome: GSM2026507

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2026507


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3150201000000000000000-189Sequence Read ArchiveSRP068012SRP068012_M15Simultaneous profiling of transcriptome and DNA methylome from a single cellMethylomeNeuron (Dorsal root ganglion)MouseSpinal cordBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000081465 Gm12884 predicted gene 12884 6.7549 0.0000
2 ENSMUSG00000083901 Gm12885 predicted gene 12885 6.7549 0.0000
3 ENSMUSG00000083941 Gm12889 predicted gene 12889 6.7549 0.0000
4 ENSMUSG00000020609 Apob apolipoprotein B 5.9069 0.0000
5 ENSMUSG00000020098 Pcbd1 pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1 5.8826 0.0000
6 ENSMUSG00000093406 Rpl48-ps1 ribosomal protein L48, pseudogene 1 5.5850 0.0000
7 ENSMUSG00000082170 Gm8617 predicted gene 8617 5.5546 0.0000
8 ENSMUSG00000082281 Gm4886 predicted gene 4886 5.5546 0.0000
9 ENSMUSG00000100837 1700063D05Rik RIKEN cDNA 1700063D05 gene 5.4263 0.0000
10 ENSMUSG00000029414 Kntc1 kinetochore associated 1 5.2854 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000040204 Pclaf PCNA clamp associated factor -4.3054 0.0000
50853 ENSMUSG00000024910 Ctsw cathepsin W -4.3008 0.0000
50852 ENSMUSG00000063457 Rps15 ribosomal protein S15 -4.2972 0.0000
50851 ENSMUSG00000038607 Gng10 guanine nucleotide binding protein (G protein), gamma 10 -4.2934 0.0000
50850 ENSMUSG00000006024 Napa N-ethylmaleimide sensitive fusion protein attachment protein alpha -4.2909 0.0000
50849 ENSMUSG00000097786 4933429H19Rik RIKEN cDNA 4933429H19 gene -4.2872 0.0000
50848 ENSMUSG00000054702 Ap1s3 adaptor-related protein complex AP-1, sigma 3 -4.2856 0.0000
50847 ENSMUSG00000042302 Ehbp1 EH domain binding protein 1 -4.2849 0.0000
50846 ENSMUSG00000024206 Rfx2 regulatory factor X, 2 (influences HLA class II expression) -4.2849 0.0000
50845 ENSMUSG00000022551 Cyc1 cytochrome c-1 -4.2839 0.0011

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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