SHOGoiN Cell Methylome: GSM2026507
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2026507 Profile download | 3150201000000000000000-189 | Sequence Read Archive | SRP068012 | SRP068012_M15 | Simultaneous profiling of transcriptome and DNA methylome from a single cell | Methylome | Neuron (Dorsal root ganglion) | Mouse | Spinal cord | Bisulfite-Seq (RRBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000081465 | Gm12884 | predicted gene 12884 | 6.7549 | 0.0000 |
| 2 | ENSMUSG00000083901 | Gm12885 | predicted gene 12885 | 6.7549 | 0.0000 |
| 3 | ENSMUSG00000083941 | Gm12889 | predicted gene 12889 | 6.7549 | 0.0000 |
| 4 | ENSMUSG00000020609 | Apob | Apolipoprotein B-100 Apolipoprotein B-48 | 5.9069 | 0.0000 |
| 5 | ENSMUSG00000020098 | Pcbd1 | Pterin-4-alpha-carbinolamine dehydratase | 5.8826 | 0.0000 |
| 6 | ENSMUSG00000093406 | Rpl48-ps1 | ribosomal protein L48, pseudogene 1 | 5.5850 | 0.0000 |
| 7 | ENSMUSG00000082170 | Gm8617 | predicted gene 8617 | 5.5546 | 0.0000 |
| 8 | ENSMUSG00000082281 | Gm4886 | predicted gene 4886 | 5.5546 | 0.0000 |
| 9 | ENSMUSG00000100837 | 1700063D05Rik | RIKEN cDNA 1700063D05 gene | 5.4263 | 0.0000 |
| 10 | ENSMUSG00000029414 | Kntc1 | Kinetochore-associated protein 1 | 5.2854 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50998 | ENSMUSG00000033900 | Map9 | Mus musculus microtubule-associated protein 9 (Map9), transcript variant 2, mRNA. | -4.5687 | 0.0000 |
| 50997 | ENSMUSG00000052291 | 5330438D12Rik | RIKEN cDNA 5330438D12 gene | -4.5682 | 0.0000 |
| 50996 | ENSMUSG00000020166 | Cnot2 | Mus musculus CCR4-NOT transcription complex, subunit 2 (Cnot2), transcript variant 6, mRNA. | -4.5682 | 0.0000 |
| 50995 | ENSMUSG00000056598 | Drc3 | Dynein regulatory complex subunit 3 | -4.5582 | 0.0000 |
| 50994 | ENSMUSG00000045598 | Zfp553 | zinc finger protein 553 | -4.5350 | 0.0000 |
| 50993 | ENSMUSG00000043398 | Gpr135 | G protein-coupled receptor 135 | -4.5343 | 0.0000 |
| 50992 | ENSMUSG00000093779 | Gm20648 | predicted gene 20648 | -4.5328 | 0.0000 |
| 50991 | ENSMUSG00000112857 | Gm35041 | predicted gene, 35041 | -4.5236 | 0.0025 |
| 50990 | ENSMUSG00000106347 | Mir5615-1 | microRNA 5615-1 | -4.5236 | 0.0025 |
| 50989 | ENSMUSG00000097907 | Raxos1 | retina and anterior neural fold homeobox, opposite strand 1 | -4.5236 | 0.0000 |
