Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2026507

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2026507 Profile download	3150201000000000000000-189	Sequence Read Archive	SRP068012	SRP068012_M15	Simultaneous profiling of transcriptome and DNA methylome from a single cell	Methylome	Neuron (Dorsal root ganglion)	Mouse	Spinal cord	Bisulfite-Seq (RRBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSMUSG00000081465	Gm12884	predicted gene 12884	6.7549	0.0000
2	ENSMUSG00000083901	Gm12885	predicted gene 12885	6.7549	0.0000
3	ENSMUSG00000083941	Gm12889	predicted gene 12889	6.7549	0.0000
4	ENSMUSG00000020609	Apob	apolipoprotein B	5.9069	0.0000
5	ENSMUSG00000020098	Pcbd1	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	5.8826	0.0000
6	ENSMUSG00000093406	Rpl48-ps1	ribosomal protein L48, pseudogene 1	5.5850	0.0000
7	ENSMUSG00000082170	Gm8617	predicted gene 8617	5.5546	0.0000
8	ENSMUSG00000082281	Gm4886	predicted gene 4886	5.5546	0.0000
9	ENSMUSG00000100837	1700063D05Rik	RIKEN cDNA 1700063D05 gene	5.4263	0.0000
10	ENSMUSG00000029414	Kntc1	kinetochore associated 1	5.2854	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
47081	ENSMUSG00000104178	Gm9916	predicted gene 9916	-2.9435	0.0003
47079	ENSMUSG00000028832	Stmn1	stathmin 1	-2.9435	0.0000
47078	ENSMUSG00000023952	Gtpbp2	GTP binding protein 2	-2.9429	0.0000
47077	ENSMUSG00000112411	Gm19337	predicted gene, 19337	-2.9424	0.0000
47076	ENSMUSG00000020064	Herc4	hect domain and RLD 4	-2.9424	0.0000
47075	ENSMUSG00000028528	Dnajc6	DnaJ heat shock protein family (Hsp40) member C6	-2.9422	0.0025
47074	ENSMUSG00000056708	Ier5	immediate early response 5	-2.9419	0.0000
47073	ENSMUSG00000073794	I0C0044D17Rik	RIKEN cDNA I0C0044D17 gene	-2.9410	0.0000
47072	ENSMUSG00000091537	Tma7	translational machinery associated 7	-2.9410	0.0000
10	ENSMUSG00000029414	Kntc1	kinetochore associated 1	5.2854	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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