SHOGoiN Cell Methylome: GSM2026507
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2026507 Profile download | 3150201000000000000000-189 | Sequence Read Archive | SRP068012 | SRP068012_M15 | Simultaneous profiling of transcriptome and DNA methylome from a single cell | Methylome | Neuron (Dorsal root ganglion) | Mouse | Spinal cord | Bisulfite-Seq (RRBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000081465 | Gm12884 | predicted gene 12884 | 6.7549 | 0.0000 |
| 2 | ENSMUSG00000083901 | Gm12885 | predicted gene 12885 | 6.7549 | 0.0000 |
| 3 | ENSMUSG00000083941 | Gm12889 | predicted gene 12889 | 6.7549 | 0.0000 |
| 4 | ENSMUSG00000020609 | Apob | apolipoprotein B | 5.9069 | 0.0000 |
| 5 | ENSMUSG00000020098 | Pcbd1 | pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1 | 5.8826 | 0.0000 |
| 6 | ENSMUSG00000093406 | Rpl48-ps1 | ribosomal protein L48, pseudogene 1 | 5.5850 | 0.0000 |
| 7 | ENSMUSG00000082170 | Gm8617 | predicted gene 8617 | 5.5546 | 0.0000 |
| 8 | ENSMUSG00000082281 | Gm4886 | predicted gene 4886 | 5.5546 | 0.0000 |
| 9 | ENSMUSG00000100837 | 1700063D05Rik | RIKEN cDNA 1700063D05 gene | 5.4263 | 0.0000 |
| 10 | ENSMUSG00000029414 | Kntc1 | kinetochore associated 1 | 5.2854 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50854 | ENSMUSG00000040204 | Pclaf | PCNA clamp associated factor | -4.3054 | 0.0000 |
| 50853 | ENSMUSG00000024910 | Ctsw | cathepsin W | -4.3008 | 0.0000 |
| 50852 | ENSMUSG00000063457 | Rps15 | ribosomal protein S15 | -4.2972 | 0.0000 |
| 50851 | ENSMUSG00000038607 | Gng10 | guanine nucleotide binding protein (G protein), gamma 10 | -4.2934 | 0.0000 |
| 50850 | ENSMUSG00000006024 | Napa | N-ethylmaleimide sensitive fusion protein attachment protein alpha | -4.2909 | 0.0000 |
| 50849 | ENSMUSG00000097786 | 4933429H19Rik | RIKEN cDNA 4933429H19 gene | -4.2872 | 0.0000 |
| 50848 | ENSMUSG00000054702 | Ap1s3 | adaptor-related protein complex AP-1, sigma 3 | -4.2856 | 0.0000 |
| 50847 | ENSMUSG00000042302 | Ehbp1 | EH domain binding protein 1 | -4.2849 | 0.0000 |
| 50846 | ENSMUSG00000024206 | Rfx2 | regulatory factor X, 2 (influences HLA class II expression) | -4.2849 | 0.0000 |
| 50845 | ENSMUSG00000022551 | Cyc1 | cytochrome c-1 | -4.2839 | 0.0011 |
