Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2042047

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042047


Profile download
7180101000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M20Human oocyte DNA methylomeMethylomeOocyte (germinal vesicle (GV) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000232217 FTLP8 ferritin light chain pseudogene 8 4.8074 0.0000
2 ENSG00000201586 RNU6-593P RNA, U6 small nuclear 593, pseudogene 4.6439 0.0000
3 ENSG00000232293 PAICSP7 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 7 4.6439 0.0000
4 ENSG00000212485 RNU6-1197P RNA, U6 small nuclear 1197, pseudogene 4.5236 0.0000
5 ENSG00000224228 novel transcript 4.5236 0.0000
6 ENSG00000228914 OR1H1P olfactory receptor family 1 subfamily H member 1 pseudogene 4.5236 0.0000
7 ENSG00000240992 RPS23P4 ribosomal protein S23 pseudogene 4 4.4799 0.0000
8 ENSG00000203942 C10orf62 chromosome 10 open reading frame 62 4.4594 0.0000
9 ENSG00000214391 TUBAP2 tubulin alpha pseudogene 2 4.4594 0.0000
10 ENSG00000249967 novel protein 4.4594 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000234448 pseudogene similar to part of ornithine aminotransferase (gyrate atrophy) (OAT) -3.1699 1.0000
63127 ENSG00000234265 LINC01723 long intergenic non-protein coding RNA 1723 -3.1699 1.0000
63126 ENSG00000234124 CSN1S2AP casein alpha s2 like A, pseudogene -3.1699 1.0000
63125 ENSG00000233048 LINC01722 long intergenic non-protein coding RNA 1722 -3.1699 1.0000
63124 ENSG00000232736 glycine cleavage system protein H (aminomethyl carrier) (GCSH) pseudogene -3.1699 0.6224
63123 ENSG00000232643 LINC00385 long intergenic non-protein coding RNA 385 -3.1699 1.0000
63122 ENSG00000232411 novel transcript -3.1699 0.6224
63121 ENSG00000231747 ribosomal protein S20 (RPS20) pseudogene -3.1699 1.0000
63120 ENSG00000231454 novel pseudogene -3.1699 0.0781
63119 ENSG00000231098 novel transcript -3.1699 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...