SHOGoiN Cell Methylome: GSM2042047

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042047


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7180101000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M20Human oocyte DNA methylomeMethylomeOocyte (germinal vesicle (GV) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000232217 FTLP8 ferritin light chain pseudogene 8 4.8074 0.0000
2 ENSG00000201586 RNU6-593P RNA, U6 small nuclear 593, pseudogene 4.6439 0.0000
3 ENSG00000232293 PAICSP7 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 7 4.6439 0.0000
4 ENSG00000212485 RNU6-1197P RNA, U6 small nuclear 1197, pseudogene 4.5236 0.0000
5 ENSG00000224228 novel transcript 4.5236 0.0000
6 ENSG00000228914 OR1H1P olfactory receptor family 1 subfamily H member 1 pseudogene 4.5236 0.0000
7 ENSG00000240992 RPS23P4 ribosomal protein S23 pseudogene 4 4.4799 0.0000
8 ENSG00000203942 C10orf62 chromosome 10 open reading frame 62 4.4594 0.0000
9 ENSG00000214391 TUBAP2 tubulin alpha pseudogene 2 4.4594 0.0000
10 ENSG00000249967 novel protein 4.4594 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000237747 eukaryotic translation initiation factor 3, subunit 1 alpha, 35kDa (EIF3S1) pseudogene -3.3219 0.1761
63340 ENSG00000235991 phosphatidylinositol binding clathrin assembly protein (PICALM) pseudogene -3.3219 1.0000
63339 ENSG00000234931 MARK2P15 microtubule affinity regulating kinase 2 pseudogene 15 -3.3219 0.6320
63338 ENSG00000234896 OR7E62P olfactory receptor family 7 subfamily E member 62 pseudogene -3.3219 1.0000
63337 ENSG00000234701 PRDX3P3 peroxiredoxin 3 pseudogene 3 -3.3219 1.0000
63336 ENSG00000234436 leukocyte immunoglobulin-like receptor, subfamily A pseudogene -3.3219 1.0000
63335 ENSG00000233819 LCEP1 late cornified envelope pseudogene 1 -3.3219 0.6320
63334 ENSG00000233482 novel transcript -3.3219 0.2572
63333 ENSG00000232905 programmed cell death 2 (PDCD2) pseudogene -3.3219 1.0000
63332 ENSG00000232773 DEFB130D defensin beta 130D (pseudogene) -3.3219 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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