SHOGoiN Cell Methylome: GSM2042047
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2042047 Profile download | 7180101000000000000000-755 | Sequence Read Archive | SRP062328 | SRP062328_M20 | Human oocyte DNA methylome | Methylome | Oocyte (germinal vesicle (GV) stage ) | Human | Genitalia | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000232217 | FTLP8 | ferritin light chain pseudogene 8 | 4.8074 | 0.0000 |
| 2 | ENSG00000201586 | RNU6-593P | RNA, U6 small nuclear 593, pseudogene | 4.6439 | 0.0000 |
| 3 | ENSG00000232293 | PAICSP7 | phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 7 | 4.6439 | 0.0000 |
| 4 | ENSG00000212485 | RNU6-1197P | RNA, U6 small nuclear 1197, pseudogene | 4.5236 | 0.0000 |
| 5 | ENSG00000224228 | novel transcript | 4.5236 | 0.0000 | |
| 6 | ENSG00000228914 | OR1H1P | olfactory receptor family 1 subfamily H member 1 pseudogene | 4.5236 | 0.0000 |
| 7 | ENSG00000240992 | RPS23P4 | ribosomal protein S23 pseudogene 4 | 4.4799 | 0.0000 |
| 8 | ENSG00000203942 | C10orf62 | chromosome 10 open reading frame 62 | 4.4594 | 0.0000 |
| 9 | ENSG00000214391 | TUBAP2 | tubulin alpha pseudogene 2 | 4.4594 | 0.0000 |
| 10 | ENSG00000249967 | novel protein | 4.4594 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000237747 | eukaryotic translation initiation factor 3, subunit 1 alpha, 35kDa (EIF3S1) pseudogene | -3.3219 | 0.1761 | |
| 63340 | ENSG00000235991 | phosphatidylinositol binding clathrin assembly protein (PICALM) pseudogene | -3.3219 | 1.0000 | |
| 63339 | ENSG00000234931 | MARK2P15 | microtubule affinity regulating kinase 2 pseudogene 15 | -3.3219 | 0.6320 |
| 63338 | ENSG00000234896 | OR7E62P | olfactory receptor family 7 subfamily E member 62 pseudogene | -3.3219 | 1.0000 |
| 63337 | ENSG00000234701 | PRDX3P3 | peroxiredoxin 3 pseudogene 3 | -3.3219 | 1.0000 |
| 63336 | ENSG00000234436 | leukocyte immunoglobulin-like receptor, subfamily A pseudogene | -3.3219 | 1.0000 | |
| 63335 | ENSG00000233819 | LCEP1 | late cornified envelope pseudogene 1 | -3.3219 | 0.6320 |
| 63334 | ENSG00000233482 | novel transcript | -3.3219 | 0.2572 | |
| 63333 | ENSG00000232905 | programmed cell death 2 (PDCD2) pseudogene | -3.3219 | 1.0000 | |
| 63332 | ENSG00000232773 | DEFB130D | defensin beta 130D (pseudogene) | -3.3219 | 1.0000 |
