Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2042047
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2042047
Profile download
7180101000000000000000-755
Sequence Read Archive
SRP062328
SRP062328_M20
Human oocyte DNA methylome
Methylome
Oocyte (germinal vesicle (GV) stage )
Human
Genitalia
Bisulfite-Seq (WGBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000232217
FTLP8
ferritin light chain pseudogene 8
4.8074
0.0000
2
ENSG00000201586
RNU6-593P
RNA, U6 small nuclear 593, pseudogene
4.6439
0.0000
3
ENSG00000232293
PAICSP7
phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 7
4.6439
0.0000
4
ENSG00000212485
RNU6-1197P
RNA, U6 small nuclear 1197, pseudogene
4.5236
0.0000
5
ENSG00000224228
novel transcript
4.5236
0.0000
6
ENSG00000228914
OR1H1P
olfactory receptor family 1 subfamily H member 1 pseudogene
4.5236
0.0000
7
ENSG00000240992
RPS23P4
ribosomal protein S23 pseudogene 4
4.4799
0.0000
8
ENSG00000203942
C10orf62
chromosome 10 open reading frame 62
4.4594
0.0000
9
ENSG00000214391
TUBAP2
tubulin alpha pseudogene 2
4.4594
0.0000
10
ENSG00000249967
novel protein
4.4594
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000234448
pseudogene similar to part of ornithine aminotransferase (gyrate atrophy) (OAT)
-3.1699
1.0000
63127
ENSG00000234265
LINC01723
long intergenic non-protein coding RNA 1723
-3.1699
1.0000
63126
ENSG00000234124
CSN1S2AP
casein alpha s2 like A, pseudogene
-3.1699
1.0000
63125
ENSG00000233048
LINC01722
long intergenic non-protein coding RNA 1722
-3.1699
1.0000
63124
ENSG00000232736
glycine cleavage system protein H (aminomethyl carrier) (GCSH) pseudogene
-3.1699
0.6224
63123
ENSG00000232643
LINC00385
long intergenic non-protein coding RNA 385
-3.1699
1.0000
63122
ENSG00000232411
novel transcript
-3.1699
0.6224
63121
ENSG00000231747
ribosomal protein S20 (RPS20) pseudogene
-3.1699
1.0000
63120
ENSG00000231454
novel pseudogene
-3.1699
0.0781
63119
ENSG00000231098
novel transcript
-3.1699
1.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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