Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2042047

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2042047 Profile download	7180101000000000000000-755	Sequence Read Archive	SRP062328	SRP062328_M20	Human oocyte DNA methylome	Methylome	Oocyte (germinal vesicle (GV) stage )	Human	Genitalia	Bisulfite-Seq (WGBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000232217	FTLP8	ferritin light chain pseudogene 8	4.8074	0.0000
2	ENSG00000201586	RNU6-593P	RNA, U6 small nuclear 593, pseudogene	4.6439	0.0000
3	ENSG00000232293	PAICSP7	phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 7	4.6439	0.0000
4	ENSG00000212485	RNU6-1197P	RNA, U6 small nuclear 1197, pseudogene	4.5236	0.0000
5	ENSG00000224228		novel transcript	4.5236	0.0000
6	ENSG00000228914	OR1H1P	olfactory receptor family 1 subfamily H member 1 pseudogene	4.5236	0.0000
7	ENSG00000240992	RPS23P4	ribosomal protein S23 pseudogene 4	4.4799	0.0000
8	ENSG00000203942	C10orf62	chromosome 10 open reading frame 62	4.4594	0.0000
9	ENSG00000214391	TUBAP2	tubulin alpha pseudogene 2	4.4594	0.0000
10	ENSG00000249967		novel protein	4.4594	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000234448		pseudogene similar to part of ornithine aminotransferase (gyrate atrophy) (OAT)	-3.1699	1.0000
63127	ENSG00000234265	LINC01723	long intergenic non-protein coding RNA 1723	-3.1699	1.0000
63126	ENSG00000234124	CSN1S2AP	casein alpha s2 like A, pseudogene	-3.1699	1.0000
63125	ENSG00000233048	LINC01722	long intergenic non-protein coding RNA 1722	-3.1699	1.0000
63124	ENSG00000232736		glycine cleavage system protein H (aminomethyl carrier) (GCSH) pseudogene	-3.1699	0.6224
63123	ENSG00000232643	LINC00385	long intergenic non-protein coding RNA 385	-3.1699	1.0000
63122	ENSG00000232411		novel transcript	-3.1699	0.6224
63121	ENSG00000231747		ribosomal protein S20 (RPS20) pseudogene	-3.1699	1.0000
63120	ENSG00000231454		novel pseudogene	-3.1699	0.0781
63119	ENSG00000231098		novel transcript	-3.1699	1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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