SHOGoiN Cell Methylome: GSM2042048

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042048


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5030206000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M21Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MI) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000213786 NHP2P2 NHP2 ribonucleoprotein pseudogene 2 3.9897 0.0000
2 ENSG00000179709 NLRP8 NLR family pyrin domain containing 8 3.8074 0.0000
3 ENSG00000243385 ribosomal protein L13 (RPL13) pseudogene 3.8074 0.0000
4 ENSG00000115816 CEBPZ CCAAT enhancer binding protein zeta 3.7004 0.0000
5 ENSG00000249995 ECM1P2 extracellular matrix protein 1 pseudogene 2 3.7004 0.0000
6 ENSG00000251195 chromosome 4 open reading frame 33 (C4orf33) pseudogene 3.7004 0.0000
7 ENSG00000267615 novel transcript, antisense to ACOX1 3.7004 0.0000
8 ENSG00000264897 MIR3921 microRNA 3921 3.6773 0.0000
9 ENSG00000259180 novel transcript, antisense to PRTG 3.6716 0.0000
10 ENSG00000257005 S100 calcium binding protein A11 (S100A11) pseudogene 3.6699 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000165300 SLITRK5 SLIT and NTRK like family member 5 -2.5774 0.3253
63340 ENSG00000256618 MTRNR2L1 MT-RNR2 like 1 -2.5706 0.0000
63339 ENSG00000266508 MIR3201 microRNA 3201 -2.5687 0.0603
63338 ENSG00000276509 novel transcript -2.5685 0.0012
63336 ENSG00000268635 novel transcript, antisense to PAK1 -2.5675 0.0069
63335 ENSG00000255111 Ankyrin repeat domain-containing protein 33 (ANKRD33B) pseudogene -2.5661 0.0089
63334 ENSG00000185847 LINC01405 long intergenic non-protein coding RNA 1405 -2.5648 0.0017
63333 ENSG00000271257 prenyl (decaprenyl) diphosphate synthase, subunit 2 (PDSS2) pseudogene -2.5646 0.6141
63332 ENSG00000251454 novel transcript -2.5646 0.6141
10 ENSG00000257005 S100 calcium binding protein A11 (S100A11) pseudogene 3.6699 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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