Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2042048

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042048


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5030206000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M21Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MI) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000213786 NHP2P2 NHP2 ribonucleoprotein pseudogene 2 3.9897 0.0000
2 ENSG00000179709 NLRP8 NLR family pyrin domain containing 8 3.8074 0.0000
3 ENSG00000243385 ribosomal protein L13 (RPL13) pseudogene 3.8074 0.0000
4 ENSG00000115816 CEBPZ CCAAT enhancer binding protein zeta 3.7004 0.0000
5 ENSG00000249995 ECM1P2 extracellular matrix protein 1 pseudogene 2 3.7004 0.0000
6 ENSG00000251195 chromosome 4 open reading frame 33 (C4orf33) pseudogene 3.7004 0.0000
7 ENSG00000267615 novel transcript, antisense to ACOX1 3.7004 0.0000
8 ENSG00000264897 MIR3921 microRNA 3921 3.6773 0.0000
9 ENSG00000259180 novel transcript, antisense to PRTG 3.6716 0.0000
10 ENSG00000257005 S100 calcium binding protein A11 (S100A11) pseudogene 3.6699 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000227278 novel transcript -2.3914 0.0000
63127 ENSG00000167779 IGFBP6 insulin like growth factor binding protein 6 -2.3907 0.0596
63125 ENSG00000188803 SHISA6 shisa family member 6 -2.3902 0.0060
63124 ENSG00000268993 RPL22P6 ribosomal protein L22 pseudogene 6 -2.3900 0.3953
63123 ENSG00000258115 novel transcript, antisense to TPH2 -2.3900 0.6242
63122 ENSG00000235121 novel transcript -2.3900 1.0000
63121 ENSG00000228420 LINC01768 long intergenic non-protein coding RNA 1768 -2.3900 0.6242
63120 ENSG00000107443 CCNJ cyclin J -2.3900 0.3953
63119 ENSG00000282907 novel transcript -2.3887 0.0002
10 ENSG00000257005 S100 calcium binding protein A11 (S100A11) pseudogene 3.6699 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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