SHOGoiN Cell Methylome: GSM2042049

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042049


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5030206000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M22Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MI) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000255005 novel transcript 5.5546 0.0000
2 ENSG00000207956 MIR579 microRNA 579 5.3219 0.0000
3 ENSG00000212333 RNA5SP213 RNA, 5S ribosomal pseudogene 213 5.2479 0.0000
4 ENSG00000212365 RNA5SP332 RNA, 5S ribosomal pseudogene 332 5.2479 0.0000
5 ENSG00000227779 NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3 12kDa pseudogene 5.2479 0.0000
6 ENSG00000257121 peroxiredoxin 6 (PRDX6) pseudogene 5.0444 0.0000
7 ENSG00000265484 novel transcript 5.0444 0.0000
8 ENSG00000254187 novel transcript 4.9069 0.0000
9 ENSG00000254947 OR8K4P olfactory receptor family 8 subfamily K member 4 pseudogene 4.8580 0.0000
10 ENSG00000256799 RAB5A, member RAS oncogene family (RAB5A) pseudogene 4.8580 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000248548 MTND4P8 MT-ND4 pseudogene 8 -3.6396 0.1129
63340 ENSG00000248420 MTATP6P9 MT-ATP6 pseudogene 9 -3.6396 0.1129
63339 ENSG00000104974 LILRA1 leukocyte immunoglobulin like receptor A1 -3.6361 0.0521
63338 ENSG00000143751 SDE2 SDE2 telomere maintenance homolog -3.6356 0.5235
63337 ENSG00000253840 dolichyl-phosphate mannosyltransferase polypeptide 3 (DPM3) pseudogene -3.6334 0.1141
63336 ENSG00000272707 novel transcript -3.6327 0.0021
63335 ENSG00000185002 RFX6 regulatory factor X6 -3.6320 0.1180
63334 ENSG00000215478 CES5AP1 carboxylesterase 5A pseudogene 1 -3.6302 0.0000
63333 ENSG00000279534 TEC -3.6285 0.0001
63332 ENSG00000176681 LRRC37A leucine rich repeat containing 37A -3.6264 0.0224

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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