SHOGoiN Cell Methylome: GSM2042050

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042050


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7180101000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M23Human oocyte DNA methylomeMethylomeOocyte (germinal vesicle (GV) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000248400 ST13P12 ST13, Hsp70 interacting protein pseudogene 12 5.2095 0.0000
2 ENSG00000253493 interferon induced transmembrane protein 3 (1-8U) (IFITM3) pseudogene 5.0875 0.0000
3 ENSG00000231328 TPT1P7 tumor protein, translationally-controlled 1 pseudogene 7 4.9069 0.0000
4 ENSG00000232131 NCOA7-AS1 NCOA7 antisense RNA 1 4.8580 0.0000
5 ENSG00000248200 ribosomal protein L17 (RPL17) pseudogene 4.7549 0.0000
6 ENSG00000254352 chromosome 4 open reading frame 46 (C4orf46) pseudogene 4.7549 0.0000
7 ENSG00000202206 RNU6-169P RNA, U6 small nuclear 169, pseudogene 4.7004 0.0000
8 ENSG00000204993 CREB regulated transcription coactivator 1 (CRTC1) pseudogene 4.7004 0.0000
9 ENSG00000260322 novel transcript 4.7004 0.0000
10 ENSG00000273629 NA 4.7004 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000226188 HNRNPA1P3 heterogeneous nuclear ribonucleoprotein A1 pseudogene 3 -3.4594 1.0000
63340 ENSG00000225919 LINC01745 long intergenic non-protein coding RNA 1745 -3.4594 0.6238
63339 ENSG00000224914 LINC00863 long intergenic non-protein coding RNA 863 -3.4594 0.0010
63338 ENSG00000224846 novel transcript -3.4594 0.4078
63337 ENSG00000222122 RNU6-648P RNA, U6 small nuclear 648, pseudogene -3.4594 1.0000
63336 ENSG00000220132 pseudogene similar to part of cleavage and polyadenylation specificity factor 1, 160 kDa (CPSF1) -3.4594 1.0000
63335 ENSG00000215480 OR7E37P olfactory receptor family 7 subfamily E member 37 pseudogene -3.4594 0.0334
63334 ENSG00000213075 RPL31P11 ribosomal protein L31 pseudogene 11 -3.4594 1.0000
63333 ENSG00000212595 RNA5SP525 RNA, 5S ribosomal pseudogene 525 -3.4594 0.1139
63332 ENSG00000211745 TRBV4-2 T cell receptor beta variable 4-2 -3.4594 0.6238

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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