Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2042051

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2042051 Profile download	5030203000000000000000-761	Sequence Read Archive	SRP062328	SRP062328_M24	Human oocyte DNA methylome	Methylome	Oocyte (mature metaphase (MII) stage )	Human	Genitalia	Bisulfite-Seq (WGBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000231729	ARHGEF9-IT1	ARHGEF9 intronic transcript 1	5.1293	0.0000
2	ENSG00000235147		pseudogene similar to part of Tripartite motif-containing protein family	4.9542	0.0000
3	ENSG00000207461	RNU6-253P	RNA, U6 small nuclear 253, pseudogene	4.9305	0.0000
4	ENSG00000282879		translation machinery associated 7 homolog (S. cerevisiae) (TMA7) pseudogene	4.8580	0.0000
5	ENSG00000147592	LACTB2	lactamase beta 2	4.8074	0.0000
6	ENSG00000231500	RPS18	ribosomal protein S18	4.8074	0.0000
7	ENSG00000235196		zinc finger protein pseudogene	4.7549	0.0000
8	ENSG00000248114		UDP glycosyltransferase 1 family, polypeptide A3 (UGT1A3) pseudogene	4.7549	0.0000
9	ENSG00000252810	RNU6-345P	RNA, U6 small nuclear 345, pseudogene	4.7549	0.0000
10	ENSG00000201744	RNU6-34P	RNA, U6 small nuclear 34, pseudogene	4.7004	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000250398		tumor necrosis factor receptor superfamily, member 13B (TNFRSF13B) pseudogene	-3.2424	0.0000
63127	ENSG00000250205	YWHAEP4	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 4	-3.2424	0.0000
63126	ENSG00000228716	DHFR	dihydrofolate reductase	-3.2416	0.0000
63125	ENSG00000272657		novel transcript	-3.2408	0.0451
63124	ENSG00000198743	SLC5A3	solute carrier family 5 member 3	-3.2408	0.0451
63123	ENSG00000270542		heat-responsive protein 12 (HRSP12) pseudogene	-3.2373	0.0000
63122	ENSG00000170370	EMX2	empty spiracles homeobox 2	-3.2351	0.0000
63121	ENSG00000264232	LINC01916	long intergenic non-protein coding RNA 1916	-3.2340	0.0195
63120	ENSG00000101439	CST3	cystatin C	-3.2320	0.0000
63119	ENSG00000238440		NA	-3.2297	0.4004

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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