Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2042051

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042051


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5030203000000000000000-761Sequence Read ArchiveSRP062328SRP062328_M24Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MII) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000231729 ARHGEF9-IT1 ARHGEF9 intronic transcript 1 5.1293 0.0000
2 ENSG00000235147 pseudogene similar to part of Tripartite motif-containing protein family 4.9542 0.0000
3 ENSG00000207461 RNU6-253P RNA, U6 small nuclear 253, pseudogene 4.9305 0.0000
4 ENSG00000282879 translation machinery associated 7 homolog (S. cerevisiae) (TMA7) pseudogene 4.8580 0.0000
5 ENSG00000147592 LACTB2 lactamase beta 2 4.8074 0.0000
6 ENSG00000231500 RPS18 ribosomal protein S18 4.8074 0.0000
7 ENSG00000235196 zinc finger protein pseudogene 4.7549 0.0000
8 ENSG00000248114 UDP glycosyltransferase 1 family, polypeptide A3 (UGT1A3) pseudogene 4.7549 0.0000
9 ENSG00000252810 RNU6-345P RNA, U6 small nuclear 345, pseudogene 4.7549 0.0000
10 ENSG00000201744 RNU6-34P RNA, U6 small nuclear 34, pseudogene 4.7004 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000250398 tumor necrosis factor receptor superfamily, member 13B (TNFRSF13B) pseudogene -3.2424 0.0000
63127 ENSG00000250205 YWHAEP4 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 4 -3.2424 0.0000
63126 ENSG00000228716 DHFR dihydrofolate reductase -3.2416 0.0000
63125 ENSG00000272657 novel transcript -3.2408 0.0451
63124 ENSG00000198743 SLC5A3 solute carrier family 5 member 3 -3.2408 0.0451
63123 ENSG00000270542 heat-responsive protein 12 (HRSP12) pseudogene -3.2373 0.0000
63122 ENSG00000170370 EMX2 empty spiracles homeobox 2 -3.2351 0.0000
63121 ENSG00000264232 LINC01916 long intergenic non-protein coding RNA 1916 -3.2340 0.0195
63120 ENSG00000101439 CST3 cystatin C -3.2320 0.0000
63119 ENSG00000238440 NA -3.2297 0.4004

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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