SHOGoiN Cell Methylome: GSM2042051

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042051


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5030203000000000000000-761Sequence Read ArchiveSRP062328SRP062328_M24Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MII) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000231729 ARHGEF9-IT1 ARHGEF9 intronic transcript 1 5.1293 0.0000
2 ENSG00000235147 pseudogene similar to part of Tripartite motif-containing protein family 4.9542 0.0000
3 ENSG00000207461 RNU6-253P RNA, U6 small nuclear 253, pseudogene 4.9305 0.0000
4 ENSG00000282879 translation machinery associated 7 homolog (S. cerevisiae) (TMA7) pseudogene 4.8580 0.0000
5 ENSG00000147592 LACTB2 lactamase beta 2 4.8074 0.0000
6 ENSG00000231500 RPS18 ribosomal protein S18 4.8074 0.0000
7 ENSG00000235196 zinc finger protein pseudogene 4.7549 0.0000
8 ENSG00000248114 UDP glycosyltransferase 1 family, polypeptide A3 (UGT1A3) pseudogene 4.7549 0.0000
9 ENSG00000252810 RNU6-345P RNA, U6 small nuclear 345, pseudogene 4.7549 0.0000
10 ENSG00000201744 RNU6-34P RNA, U6 small nuclear 34, pseudogene 4.7004 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000136110 CNMD chondromodulin -3.4594 0.0297
63340 ENSG00000126890 CTAG2 cancer/testis antigen 2 -3.4594 0.2522
63339 ENSG00000120211 INSL4 insulin like 4 -3.4594 0.6128
63338 ENSG00000115274 INO80B INO80 complex subunit B -3.4594 0.0135
63337 ENSG00000105131 EPHX3 epoxide hydrolase 3 -3.4594 0.0000
63336 ENSG00000100983 GSS glutathione synthetase -3.4594 0.0005
63335 ENSG00000256128 LINC00944 long intergenic non-protein coding RNA 944 -3.4537 0.0000
63334 ENSG00000218754 RPL18AP8 ribosomal protein L18a pseudogene 8 -3.4496 0.0000
63333 ENSG00000228997 ORM1-like (S. cerevisiae) pseudogene -3.4466 0.1115
63332 ENSG00000272079 novel transcript -3.4442 0.0078

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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