SHOGoiN Cell Methylome: GSM2042051
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2042051 Profile download | 5030203000000000000000-761 | Sequence Read Archive | SRP062328 | SRP062328_M24 | Human oocyte DNA methylome | Methylome | Oocyte (mature metaphase (MII) stage ) | Human | Genitalia | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000231729 | ARHGEF9-IT1 | ARHGEF9 intronic transcript 1 | 5.1293 | 0.0000 |
| 2 | ENSG00000235147 | pseudogene similar to part of Tripartite motif-containing protein family | 4.9542 | 0.0000 | |
| 3 | ENSG00000207461 | RNU6-253P | RNA, U6 small nuclear 253, pseudogene | 4.9305 | 0.0000 |
| 4 | ENSG00000282879 | translation machinery associated 7 homolog (S. cerevisiae) (TMA7) pseudogene | 4.8580 | 0.0000 | |
| 5 | ENSG00000147592 | LACTB2 | lactamase beta 2 | 4.8074 | 0.0000 |
| 6 | ENSG00000231500 | RPS18 | ribosomal protein S18 | 4.8074 | 0.0000 |
| 7 | ENSG00000235196 | zinc finger protein pseudogene | 4.7549 | 0.0000 | |
| 8 | ENSG00000248114 | UDP glycosyltransferase 1 family, polypeptide A3 (UGT1A3) pseudogene | 4.7549 | 0.0000 | |
| 9 | ENSG00000252810 | RNU6-345P | RNA, U6 small nuclear 345, pseudogene | 4.7549 | 0.0000 |
| 10 | ENSG00000201744 | RNU6-34P | RNA, U6 small nuclear 34, pseudogene | 4.7004 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000136110 | CNMD | chondromodulin | -3.4594 | 0.0297 |
| 63340 | ENSG00000126890 | CTAG2 | cancer/testis antigen 2 | -3.4594 | 0.2522 |
| 63339 | ENSG00000120211 | INSL4 | insulin like 4 | -3.4594 | 0.6128 |
| 63338 | ENSG00000115274 | INO80B | INO80 complex subunit B | -3.4594 | 0.0135 |
| 63337 | ENSG00000105131 | EPHX3 | epoxide hydrolase 3 | -3.4594 | 0.0000 |
| 63336 | ENSG00000100983 | GSS | glutathione synthetase | -3.4594 | 0.0005 |
| 63335 | ENSG00000256128 | LINC00944 | long intergenic non-protein coding RNA 944 | -3.4537 | 0.0000 |
| 63334 | ENSG00000218754 | RPL18AP8 | ribosomal protein L18a pseudogene 8 | -3.4496 | 0.0000 |
| 63333 | ENSG00000228997 | ORM1-like (S. cerevisiae) pseudogene | -3.4466 | 0.1115 | |
| 63332 | ENSG00000272079 | novel transcript | -3.4442 | 0.0078 |
