SHOGoiN Cell Methylome: GSM2042051
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2042051 Profile download | 5030203000000000000000-761 | Sequence Read Archive | SRP062328 | SRP062328_M24 | Human oocyte DNA methylome | Methylome | Oocyte (mature metaphase (MII) stage ) | Human | Genitalia | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000231729 | ARHGEF9-IT1 | ARHGEF9 intronic transcript 1 | 5.1293 | 0.0000 |
| 2 | ENSG00000235147 | NA | 4.9542 | 0.0000 | |
| 3 | ENSG00000207461 | RNU6-253P | RNA, U6 small nuclear 253, pseudogene | 4.9305 | 0.0000 |
| 4 | ENSG00000282879 | NA | 4.8580 | 0.0000 | |
| 5 | ENSG00000147592 | LACTB2 | lactamase beta 2 | 4.8074 | 0.0000 |
| 6 | ENSG00000231500 | RPS18 | ribosomal protein S18 | 4.8074 | 0.0000 |
| 7 | ENSG00000235196 | NA | 4.7549 | 0.0000 | |
| 8 | ENSG00000248114 | NA | 4.7549 | 0.0000 | |
| 9 | ENSG00000252810 | RNU6-345P | RNA, U6 small nuclear 345, pseudogene | 4.7549 | 0.0000 |
| 10 | ENSG00000201744 | RNU6-34P | RNA, U6 small nuclear 34, pseudogene | 4.7004 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63647 | ENSG00000133065 | SLC41A1 | solute carrier family 41 member 1 | -3.7847 | 0.0001 |
| 63646 | ENSG00000229595 | NA | -3.7806 | 0.0085 | |
| 63645 | ENSG00000257582 | LINC01475 | long intergenic non-protein coding RNA 1475 | -3.7787 | 0.0000 |
| 63644 | ENSG00000200334 | NA | -3.7737 | 0.0056 | |
| 63643 | ENSG00000168769 | TET2 | tet methylcytosine dioxygenase 2 | -3.7631 | 0.0001 |
| 63642 | ENSG00000202089 | RNU6-1306P | RNA, U6 small nuclear 1306, pseudogene | -3.7595 | 0.0025 |
| 63641 | ENSG00000159186 | NA | -3.7539 | 0.1663 | |
| 63640 | ENSG00000186907 | RTN4RL2 | reticulon 4 receptor like 2 | -3.7510 | 0.0000 |
| 63639 | ENSG00000259111 | NA | -3.7438 | 0.0003 | |
| 63638 | ENSG00000235303 | NA | -3.7429 | 0.0195 |
