Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2042051
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2042051
Profile download
5030203000000000000000-761
Sequence Read Archive
SRP062328
SRP062328_M24
Human oocyte DNA methylome
Methylome
Oocyte (mature metaphase (MII) stage )
Human
Genitalia
Bisulfite-Seq (WGBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000231729
ARHGEF9-IT1
ARHGEF9 intronic transcript 1
5.1293
0.0000
2
ENSG00000235147
pseudogene similar to part of Tripartite motif-containing protein family
4.9542
0.0000
3
ENSG00000207461
RNU6-253P
RNA, U6 small nuclear 253, pseudogene
4.9305
0.0000
4
ENSG00000282879
translation machinery associated 7 homolog (S. cerevisiae) (TMA7) pseudogene
4.8580
0.0000
5
ENSG00000147592
LACTB2
lactamase beta 2
4.8074
0.0000
6
ENSG00000231500
RPS18
ribosomal protein S18
4.8074
0.0000
7
ENSG00000235196
zinc finger protein pseudogene
4.7549
0.0000
8
ENSG00000248114
UDP glycosyltransferase 1 family, polypeptide A3 (UGT1A3) pseudogene
4.7549
0.0000
9
ENSG00000252810
RNU6-345P
RNA, U6 small nuclear 345, pseudogene
4.7549
0.0000
10
ENSG00000201744
RNU6-34P
RNA, U6 small nuclear 34, pseudogene
4.7004
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000250398
tumor necrosis factor receptor superfamily, member 13B (TNFRSF13B) pseudogene
-3.2424
0.0000
63127
ENSG00000250205
YWHAEP4
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 4
-3.2424
0.0000
63126
ENSG00000228716
DHFR
dihydrofolate reductase
-3.2416
0.0000
63125
ENSG00000272657
novel transcript
-3.2408
0.0451
63124
ENSG00000198743
SLC5A3
solute carrier family 5 member 3
-3.2408
0.0451
63123
ENSG00000270542
heat-responsive protein 12 (HRSP12) pseudogene
-3.2373
0.0000
63122
ENSG00000170370
EMX2
empty spiracles homeobox 2
-3.2351
0.0000
63121
ENSG00000264232
LINC01916
long intergenic non-protein coding RNA 1916
-3.2340
0.0195
63120
ENSG00000101439
CST3
cystatin C
-3.2320
0.0000
63119
ENSG00000238440
NA
-3.2297
0.4004
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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